STRINGSTRING
LOC108883856 LOC108883856 ENSLCAP00010009886 ENSLCAP00010009886 LOC108884954 LOC108884954 LOC108879813 LOC108879813 opn3 opn3 ENSLCAP00010019944 ENSLCAP00010019944 LOC108892944 LOC108892944 LOC108889378 LOC108889378 RHO RHO Opn1sw Opn1sw LOC108889869 LOC108889869 ENSLCAP00010028258 ENSLCAP00010028258 LOC108882805 LOC108882805 LOC108889502 LOC108889502 LOC108885579 LOC108885579 LOC108885582 LOC108885582 LOC108886549 LOC108886549 LOC108885583 LOC108885583 LOC108885586 LOC108885586 ENSLCAP00010044870 ENSLCAP00010044870 LOC108900571 LOC108900571 ENSLCAP00010049942 ENSLCAP00010049942 LOC108881136 LOC108881136 LOC108877998 LOC108877998
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108883856G_PROTEIN_RECEP_F1_2 domain-containing protein. (405 aa)
ENSLCAP00010009886G_PROTEIN_RECEP_F1_2 domain-containing protein. (505 aa)
LOC108884954G_PROTEIN_RECEP_F1_2 domain-containing protein. (491 aa)
LOC108879813G_PROTEIN_RECEP_F1_2 domain-containing protein. (548 aa)
opn3G_PROTEIN_RECEP_F1_2 domain-containing protein. (400 aa)
ENSLCAP00010019944Rhodopsin. (352 aa)
LOC108892944G_PROTEIN_RECEP_F1_2 domain-containing protein. (391 aa)
LOC108889378Rhodopsin. (345 aa)
RHORhodopsin. (354 aa)
Opn1swOpsin 1 (cone pigments), short-wave-sensitive 1. (326 aa)
LOC108889869Rhodopsin. (353 aa)
ENSLCAP00010028258Rhodopsin. (331 aa)
LOC108882805G_PROTEIN_RECEP_F1_2 domain-containing protein. (558 aa)
LOC108889502Rhodopsin. (353 aa)
LOC108885579G_PROTEIN_RECEP_F1_2 domain-containing protein. (357 aa)
LOC108885582G_PROTEIN_RECEP_F1_2 domain-containing protein. (352 aa)
LOC108886549G_PROTEIN_RECEP_F1_2 domain-containing protein. (339 aa)
LOC108885583G_PROTEIN_RECEP_F1_2 domain-containing protein. (351 aa)
LOC108885586G_PROTEIN_RECEP_F1_2 domain-containing protein. (351 aa)
ENSLCAP00010044870Parietopsin. (343 aa)
LOC108900571G_PROTEIN_RECEP_F1_2 domain-containing protein. (347 aa)
ENSLCAP00010049942Teleost multiple tissue opsin 2b. (394 aa)
LOC108881136G_PROTEIN_RECEP_F1_2 domain-containing protein. (387 aa)
LOC108877998G_PROTEIN_RECEP_F1_2 domain-containing protein. (557 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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