14 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ntrk2	Tyrosine-protein kinase receptor. (806 aa)
	LOC108875055	Uncharacterized protein. (898 aa)
	ntrk3	Tyrosine-protein kinase receptor. (828 aa)
	LOC108897720	Tyrosine-protein kinase receptor. (1430 aa)
	ENSLCAP00010053743	Tyrosine-protein kinase receptor. (796 aa)
	LOC108881334	Tyrosine-protein kinase receptor. (1372 aa)
	LOC108883796	Uncharacterized protein. (868 aa)
	ENSLCAP00010048968	Tyrosine-protein kinase receptor. (1485 aa)
	ENSLCAP00010047577	Tyrosine-protein kinase receptor. (619 aa)
	LOC108884165	Tyrosine-protein kinase receptor. (1389 aa)
	LOC108875244	Tyrosine-protein kinase receptor. (1419 aa)
	ddr1	Uncharacterized protein. (1013 aa)
	ENSLCAP00010006022	Tyrosine-protein kinase receptor. (777 aa)
	ntrk1	Tyrosine-protein kinase receptor. (802 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108875244	LOC108884165	ENSLCAP00010019810	ENSLCAP00010034632	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC108875244	LOC108897720	ENSLCAP00010019810	ENSLCAP00010057841	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.901
LOC108884165	LOC108875244	ENSLCAP00010034632	ENSLCAP00010019810	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC108884165	LOC108897720	ENSLCAP00010034632	ENSLCAP00010057841	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC108897720	LOC108875244	ENSLCAP00010057841	ENSLCAP00010019810	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.901
LOC108897720	LOC108884165	ENSLCAP00010057841	ENSLCAP00010034632	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902