56 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108876974	Sema domain-containing protein; Belongs to the semaphorin family. (837 aa)
	ENSLCAP00010051624	Plexin A2. (1929 aa)
	LOC108901087	PSI domain-containing protein. (190 aa)
	LOC108896365	Sema domain-containing protein; Belongs to the semaphorin family. (820 aa)
	LOC108882563	Uncharacterized protein; Belongs to the semaphorin family. (768 aa)
	LOC108879518	Sema domain-containing protein. (1905 aa)
	megf8	Uncharacterized protein. (2890 aa)
	Plxna4	Plexin A4. (1916 aa)
	ENSLCAP00010004719	Uncharacterized protein. (1347 aa)
	Met	MET proto-oncogene, receptor tyrosine kinase. (1377 aa)
	sema3g	Uncharacterized protein; Belongs to the semaphorin family. (788 aa)
	PLXNA1	Plexin A1. (1886 aa)
	ENSLCAP00010005814	Uncharacterized protein; Belongs to the semaphorin family. (825 aa)
	Atrn	Attractin. (1371 aa)
	sema3c	Uncharacterized protein; Belongs to the semaphorin family. (766 aa)
	Sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (808 aa)
	ENSLCAP00010008517	Integrin beta; Belongs to the integrin beta chain family. (783 aa)
	LOC108879659	Uncharacterized protein; Belongs to the semaphorin family. (864 aa)
	LOC108883171	Sema domain-containing protein; Belongs to the semaphorin family. (639 aa)
	Atrnl1	Attractin-like 1b. (1378 aa)
	Sema4d	Uncharacterized protein; Belongs to the semaphorin family. (875 aa)
	LOC108894805	PSI domain-containing protein. (484 aa)
	LOC108875388	Sema domain-containing protein; Belongs to the semaphorin family. (836 aa)
	LOC108880947	Integrin beta; Belongs to the integrin beta chain family. (802 aa)
	LOC108889982	Uncharacterized protein; Belongs to the semaphorin family. (790 aa)
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (806 aa)
	LOC108889968	Uncharacterized protein. (1377 aa)
	ENSLCAP00010018042	Plexin b2a. (1845 aa)
	ENSLCAP00010019011	Plexin b2b. (1837 aa)
	PLXNA2	Plexin A2. (1898 aa)
	ENSLCAP00010020036	Si:ch211-129c21.1; Belongs to the semaphorin family. (737 aa)
	PLXND1	Plexin D1. (1801 aa)
	ENSLCAP00010020958	Plexin A1a. (1907 aa)
	LOC108882671	Sema domain-containing protein. (1979 aa)
	ENSLCAP00010023161	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (725 aa)
	sema3a	Uncharacterized protein; Belongs to the semaphorin family. (777 aa)
	sema3e	Uncharacterized protein; Belongs to the semaphorin family. (789 aa)
	sema7a	Uncharacterized protein; Belongs to the semaphorin family. (655 aa)
	ENSLCAP00010028429	Uncharacterized protein; Belongs to the semaphorin family. (874 aa)
	ENSLCAP00010028496	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (718 aa)
	ENSLCAP00010028749	Sema domain-containing protein; Belongs to the semaphorin family. (773 aa)
	LOC108881836	Sema domain-containing protein. (1078 aa)
	LOC108884138	PSI domain-containing protein. (548 aa)
	ENSLCAP00010036050	Plexin b1b. (2216 aa)
	ENSLCAP00010038332	Plexin B3. (1874 aa)
	ENSLCAP00010038454	Sema domain-containing protein. (1006 aa)
	sema4c	Uncharacterized protein; Belongs to the semaphorin family. (868 aa)
	ENSLCAP00010039910	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (750 aa)
	mst1r	Uncharacterized protein. (1374 aa)
	LOC108892896	Sema domain-containing protein. (1092 aa)
	ENSLCAP00010042788	Integrin beta; Belongs to the integrin beta chain family. (752 aa)
	ENSLCAP00010042789	Integrin beta. (545 aa)
	itgb5	Integrin beta; Belongs to the integrin beta chain family. (809 aa)
	ENSLCAP00010046752	Sema domain-containing protein; Belongs to the semaphorin family. (586 aa)
	LOC108872765	Integrin beta; Belongs to the integrin beta chain family. (809 aa)
	PLXDC2	PSI domain-containing protein. (552 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010005814	ENSLCAP00010018042	ENSLCAP00010005814	ENSLCAP00010018042	Uncharacterized protein; Belongs to the semaphorin family.	Plexin b2a.	0.456
ENSLCAP00010005814	ENSLCAP00010019011	ENSLCAP00010005814	ENSLCAP00010019011	Uncharacterized protein; Belongs to the semaphorin family.	Plexin b2b.	0.456
ENSLCAP00010005814	ENSLCAP00010020958	ENSLCAP00010005814	ENSLCAP00010020958	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A1a.	0.450
ENSLCAP00010005814	ENSLCAP00010036050	ENSLCAP00010005814	ENSLCAP00010036050	Uncharacterized protein; Belongs to the semaphorin family.	Plexin b1b.	0.456
ENSLCAP00010005814	ENSLCAP00010038332	ENSLCAP00010005814	ENSLCAP00010038332	Uncharacterized protein; Belongs to the semaphorin family.	Plexin B3.	0.456
ENSLCAP00010005814	ENSLCAP00010051624	ENSLCAP00010005814	ENSLCAP00010051624	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A2.	0.450
ENSLCAP00010005814	LOC108879518	ENSLCAP00010005814	ENSLCAP00010055996	Uncharacterized protein; Belongs to the semaphorin family.	Sema domain-containing protein.	0.450
ENSLCAP00010005814	LOC108882671	ENSLCAP00010005814	ENSLCAP00010021995	Uncharacterized protein; Belongs to the semaphorin family.	Sema domain-containing protein.	0.456
ENSLCAP00010005814	LOC108889968	ENSLCAP00010005814	ENSLCAP00010017828	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.621
ENSLCAP00010005814	Met	ENSLCAP00010005814	ENSLCAP00010004840	Uncharacterized protein; Belongs to the semaphorin family.	MET proto-oncogene, receptor tyrosine kinase.	0.621
ENSLCAP00010005814	PLXNA1	ENSLCAP00010005814	ENSLCAP00010005785	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A1.	0.450
ENSLCAP00010005814	PLXNA2	ENSLCAP00010005814	ENSLCAP00010019961	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A2.	0.450
ENSLCAP00010005814	PLXND1	ENSLCAP00010005814	ENSLCAP00010020786	Uncharacterized protein; Belongs to the semaphorin family.	Plexin D1.	0.450
ENSLCAP00010005814	Plxna4	ENSLCAP00010005814	ENSLCAP00010004697	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A4.	0.450
ENSLCAP00010005814	mst1r	ENSLCAP00010005814	ENSLCAP00010039979	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.621
ENSLCAP00010008517	ENSLCAP00010042788	ENSLCAP00010008517	ENSLCAP00010042788	Integrin beta; Belongs to the integrin beta chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.704
ENSLCAP00010008517	ENSLCAP00010042789	ENSLCAP00010008517	ENSLCAP00010042789	Integrin beta; Belongs to the integrin beta chain family.	Integrin beta.	0.603
ENSLCAP00010008517	LOC108872765	ENSLCAP00010008517	ENSLCAP00010048928	Integrin beta; Belongs to the integrin beta chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.901
ENSLCAP00010008517	LOC108880947	ENSLCAP00010008517	ENSLCAP00010013808	Integrin beta; Belongs to the integrin beta chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.599
ENSLCAP00010008517	LOC108889968	ENSLCAP00010008517	ENSLCAP00010017828	Integrin beta; Belongs to the integrin beta chain family.	Uncharacterized protein.	0.546