4 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108872675	Uncharacterized protein. (145 aa)
	LOC108880235	Uncharacterized protein. (175 aa)
	ENSLCAP00010042867	Uncharacterized protein. (147 aa)
	ptn	Uncharacterized protein. (223 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010042867	ptn	ENSLCAP00010042867	ENSLCAP00010005573	Uncharacterized protein.	Uncharacterized protein.	0.591
LOC108872675	ptn	ENSLCAP00010001488	ENSLCAP00010005573	Uncharacterized protein.	Uncharacterized protein.	0.591
LOC108880235	ptn	ENSLCAP00010043088	ENSLCAP00010005573	Uncharacterized protein.	Uncharacterized protein.	0.591
ptn	ENSLCAP00010042867	ENSLCAP00010005573	ENSLCAP00010042867	Uncharacterized protein.	Uncharacterized protein.	0.591
ptn	LOC108872675	ENSLCAP00010005573	ENSLCAP00010001488	Uncharacterized protein.	Uncharacterized protein.	0.591
ptn	LOC108880235	ENSLCAP00010005573	ENSLCAP00010043088	Uncharacterized protein.	Uncharacterized protein.	0.591