30 items (Lates calcarifer) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	ENSLCAP00010046546	Ankyrin repeat domain 44. (1050 aa)
	Gar1	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (222 aa)
	ccna1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (416 aa)
	dkc1	PUA domain-containing protein. (507 aa)
	pif1	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (632 aa)
	LOC108902035	ANK_REP_REGION domain-containing protein. (168 aa)
	trub1	Uncharacterized protein. (278 aa)
	ccna2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (436 aa)
	ENSLCAP00010000450	TINF2_N domain-containing protein. (96 aa)
	PPP6C-2	Serine/threonine-protein phosphatase. (305 aa)
	tert	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1100 aa)
	LOC108886744	ANK_REP_REGION domain-containing protein. (168 aa)
	Terf2	Uncharacterized protein. (185 aa)
	ENSLCAP00010055044	HTH myb-type domain-containing protein. (124 aa)
	ENSLCAP00010055640	annotation not available (277 aa)
	ENSLCAP00010055689	SHQ1, H/ACA ribonucleoprotein assembly factor. (577 aa)
	ENSLCAP00010055815	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (285 aa)
	ENSLCAP00010044578	Uncharacterized protein. (476 aa)
	Pot1	Protection of telomeres 1 homolog. (536 aa)
	ankrd28	ANK_REP_REGION domain-containing protein. (1083 aa)
	PPP6C	Serine/threonine-protein phosphatase. (301 aa)
	LOC108900468	Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1108 aa)
	wrap53	WD_REPEATS_REGION domain-containing protein. (557 aa)
	Ruvbl2	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (418 aa)
	LOC108877712	ANK_REP_REGION domain-containing protein. (1101 aa)
	cdk2-2	Cyclin-dependent kinase 2. (298 aa)
	ENSLCAP00010044467	BRCT domain-containing protein. (486 aa)
	nop10	Uncharacterized protein. (64 aa)
	nhp2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (159 aa)
	cdk2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (298 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010000450	ENSLCAP00010044467	ENSLCAP00010000450	ENSLCAP00010044467	TINF2_N domain-containing protein.	BRCT domain-containing protein.	0.973
ENSLCAP00010000450	ENSLCAP00010044578	ENSLCAP00010000450	ENSLCAP00010044578	TINF2_N domain-containing protein.	Uncharacterized protein.	0.990
ENSLCAP00010000450	Gar1	ENSLCAP00010000450	ENSLCAP00010047064	TINF2_N domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.686
ENSLCAP00010000450	LOC108900468	ENSLCAP00010000450	ENSLCAP00010033459	TINF2_N domain-containing protein.	Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...]	0.784
ENSLCAP00010000450	PPP6C	ENSLCAP00010000450	ENSLCAP00010028543	TINF2_N domain-containing protein.	Serine/threonine-protein phosphatase.	0.434
ENSLCAP00010000450	PPP6C-2	ENSLCAP00010000450	ENSLCAP00010058538	TINF2_N domain-containing protein.	Serine/threonine-protein phosphatase.	0.434
ENSLCAP00010000450	Pot1	ENSLCAP00010000450	ENSLCAP00010000524	TINF2_N domain-containing protein.	Protection of telomeres 1 homolog.	0.988
ENSLCAP00010000450	Terf2	ENSLCAP00010000450	ENSLCAP00010055041	TINF2_N domain-containing protein.	Uncharacterized protein.	0.984
ENSLCAP00010000450	ccna1	ENSLCAP00010000450	ENSLCAP00010047573	TINF2_N domain-containing protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.578
ENSLCAP00010000450	ccna2	ENSLCAP00010000450	ENSLCAP00010056469	TINF2_N domain-containing protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.578
ENSLCAP00010000450	dkc1	ENSLCAP00010000450	ENSLCAP00010048242	TINF2_N domain-containing protein.	PUA domain-containing protein.	0.834
ENSLCAP00010000450	nhp2	ENSLCAP00010000450	ENSLCAP00010010346	TINF2_N domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.844
ENSLCAP00010000450	nop10	ENSLCAP00010000450	ENSLCAP00010009936	TINF2_N domain-containing protein.	Uncharacterized protein.	0.836
ENSLCAP00010000450	pif1	ENSLCAP00010000450	ENSLCAP00010048295	TINF2_N domain-containing protein.	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	0.444
ENSLCAP00010000450	tert	ENSLCAP00010000450	ENSLCAP00010053616	TINF2_N domain-containing protein.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.814
ENSLCAP00010000450	wrap53	ENSLCAP00010000450	ENSLCAP00010034979	TINF2_N domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.791
ENSLCAP00010044467	ENSLCAP00010000450	ENSLCAP00010044467	ENSLCAP00010000450	BRCT domain-containing protein.	TINF2_N domain-containing protein.	0.973
ENSLCAP00010044467	ENSLCAP00010044578	ENSLCAP00010044467	ENSLCAP00010044578	BRCT domain-containing protein.	Uncharacterized protein.	0.971
ENSLCAP00010044467	ENSLCAP00010055044	ENSLCAP00010044467	ENSLCAP00010055044	BRCT domain-containing protein.	HTH myb-type domain-containing protein.	0.967
ENSLCAP00010044467	Gar1	ENSLCAP00010044467	ENSLCAP00010047064	BRCT domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.594