24 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010043120	PR domain containing 1b, with ZNF domain. (647 aa)
	pik3cb	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1086 aa)
	prdm1	Uncharacterized protein. (857 aa)
	ptn	Uncharacterized protein. (223 aa)
	SHC4	SHC adaptor protein 4. (460 aa)
	LOC108892325	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1070 aa)
	LOC108872675	Uncharacterized protein. (145 aa)
	ENSLCAP00010013377	Tyrosine-protein kinase. (1106 aa)
	LOC108882207	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1070 aa)
	ptpn6	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (596 aa)
	ENSLCAP00010023432	E1A binding protein p300 b. (2634 aa)
	ENSLCAP00010027430	Uncharacterized protein. (1508 aa)
	ENSLCAP00010039640	SET domain-containing protein. (504 aa)
	ENSLCAP00010039859	Myc_N domain-containing protein. (158 aa)
	ENSLCAP00010042867	Uncharacterized protein. (147 aa)
	LOC108880235	Uncharacterized protein. (175 aa)
	plcg1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1314 aa)
	LOC108880106	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	ENSLCAP00010047577	Tyrosine-protein kinase receptor. (619 aa)
	ENSLCAP00010048968	Tyrosine-protein kinase receptor. (1485 aa)
	LOC108883763	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	shc1	Uncharacterized protein. (596 aa)
	Hdac3	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (459 aa)
	ENSLCAP00010056253	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b. (1429 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010013377	ENSLCAP00010047577	ENSLCAP00010013377	ENSLCAP00010047577	Tyrosine-protein kinase.	Tyrosine-protein kinase receptor.	0.424
ENSLCAP00010013377	ENSLCAP00010048968	ENSLCAP00010013377	ENSLCAP00010048968	Tyrosine-protein kinase.	Tyrosine-protein kinase receptor.	0.424
ENSLCAP00010013377	SHC4	ENSLCAP00010013377	ENSLCAP00010003690	Tyrosine-protein kinase.	SHC adaptor protein 4.	0.508
ENSLCAP00010013377	ptpn6	ENSLCAP00010013377	ENSLCAP00010016042	Tyrosine-protein kinase.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.576
ENSLCAP00010013377	shc1	ENSLCAP00010013377	ENSLCAP00010054635	Tyrosine-protein kinase.	Uncharacterized protein.	0.508
ENSLCAP00010023432	Hdac3	ENSLCAP00010023432	ENSLCAP00010054703	E1A binding protein p300 b.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.779
ENSLCAP00010027430	ENSLCAP00010042867	ENSLCAP00010027430	ENSLCAP00010042867	Uncharacterized protein.	Uncharacterized protein.	0.662
ENSLCAP00010027430	ENSLCAP00010047577	ENSLCAP00010027430	ENSLCAP00010047577	Uncharacterized protein.	Tyrosine-protein kinase receptor.	0.494
ENSLCAP00010027430	ENSLCAP00010048968	ENSLCAP00010027430	ENSLCAP00010048968	Uncharacterized protein.	Tyrosine-protein kinase receptor.	0.494
ENSLCAP00010027430	LOC108872675	ENSLCAP00010027430	ENSLCAP00010001488	Uncharacterized protein.	Uncharacterized protein.	0.662
ENSLCAP00010027430	LOC108880235	ENSLCAP00010027430	ENSLCAP00010043088	Uncharacterized protein.	Uncharacterized protein.	0.662
ENSLCAP00010027430	ptn	ENSLCAP00010027430	ENSLCAP00010005573	Uncharacterized protein.	Uncharacterized protein.	0.862
ENSLCAP00010039859	ENSLCAP00010047577	ENSLCAP00010039859	ENSLCAP00010047577	Myc_N domain-containing protein.	Tyrosine-protein kinase receptor.	0.584
ENSLCAP00010039859	ENSLCAP00010048968	ENSLCAP00010039859	ENSLCAP00010048968	Myc_N domain-containing protein.	Tyrosine-protein kinase receptor.	0.584
ENSLCAP00010042867	ENSLCAP00010027430	ENSLCAP00010042867	ENSLCAP00010027430	Uncharacterized protein.	Uncharacterized protein.	0.662
ENSLCAP00010042867	ENSLCAP00010047577	ENSLCAP00010042867	ENSLCAP00010047577	Uncharacterized protein.	Tyrosine-protein kinase receptor.	0.623
ENSLCAP00010042867	ENSLCAP00010048968	ENSLCAP00010042867	ENSLCAP00010048968	Uncharacterized protein.	Tyrosine-protein kinase receptor.	0.623
ENSLCAP00010042867	ENSLCAP00010056253	ENSLCAP00010042867	ENSLCAP00010056253	Uncharacterized protein.	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b.	0.662
ENSLCAP00010042867	SHC4	ENSLCAP00010042867	ENSLCAP00010003690	Uncharacterized protein.	SHC adaptor protein 4.	0.433
ENSLCAP00010042867	plcg1	ENSLCAP00010042867	ENSLCAP00010046725	Uncharacterized protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.431