28 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010001523	V-ski avian sarcoma viral oncogene homolog a. (720 aa)
	ENSLCAP00010001596	Mothers against decapentaplegic homolog. (531 aa)
	LOC108881026	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (399 aa)
	LOC108887878	Mothers against decapentaplegic homolog. (452 aa)
	Trim33	Tripartite motif containing 33. (1241 aa)
	rps27a	Ubiquitin-like domain-containing protein. (156 aa)
	ENSLCAP00010006036	Homeobox domain-containing protein. (657 aa)
	ENSLCAP00010010391	Neural precursor cell expressed, developmentally down-regulated 4-like. (1215 aa)
	LOC108899258	c-SKI_SMAD_bind domain-containing protein. (694 aa)
	LOC108896340	Mothers against decapentaplegic homolog. (616 aa)
	SMAD4	Mothers against decapentaplegic homolog. (524 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1014 aa)
	snw1	SKIP_SNW domain-containing protein. (531 aa)
	Usp9x	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2533 aa)
	smad3	Mothers against decapentaplegic homolog. (449 aa)
	LOC108876789	Ubiquitin-like domain-containing protein. (128 aa)
	LOC108878489	Mothers against decapentaplegic homolog. (467 aa)
	skil	c-SKI_SMAD_bind domain-containing protein. (772 aa)
	Ubb	Ubiquitin B. (517 aa)
	ncor1	Uncharacterized protein. (2384 aa)
	LOC108896283	Homeobox domain-containing protein. (321 aa)
	LOC108883656	Ubiquitin-like domain-containing protein. (128 aa)
	ENSLCAP00010046672	Ubiquitin-like domain-containing protein. (116 aa)
	LOC108876789-2	Ubiquitin-like domain-containing protein. (155 aa)
	ENSLCAP00010050805	Nuclear receptor corepressor 2. (2269 aa)
	mapk1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (380 aa)
	Atp1b4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (376 aa)
	LOC108886018	Mothers against decapentaplegic homolog. (474 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atp1b4	snw1	ENSLCAP00010053938	ENSLCAP00010021658	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	SKIP_SNW domain-containing protein.	0.780
ENSLCAP00010001523	ENSLCAP00010001596	ENSLCAP00010001523	ENSLCAP00010001596	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.922
ENSLCAP00010001523	ENSLCAP00010046672	ENSLCAP00010001523	ENSLCAP00010046672	V-ski avian sarcoma viral oncogene homolog a.	Ubiquitin-like domain-containing protein.	0.557
ENSLCAP00010001523	ENSLCAP00010050805	ENSLCAP00010001523	ENSLCAP00010050805	V-ski avian sarcoma viral oncogene homolog a.	Nuclear receptor corepressor 2.	0.747
ENSLCAP00010001523	LOC108878489	ENSLCAP00010001523	ENSLCAP00010032926	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	LOC108886018	ENSLCAP00010001523	ENSLCAP00010060462	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	LOC108887878	ENSLCAP00010001523	ENSLCAP00010002040	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	LOC108896340	ENSLCAP00010001523	ENSLCAP00010011045	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.922
ENSLCAP00010001523	SMAD4	ENSLCAP00010001523	ENSLCAP00010013760	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.922
ENSLCAP00010001523	Ubb	ENSLCAP00010001523	ENSLCAP00010040766	V-ski avian sarcoma viral oncogene homolog a.	Ubiquitin B.	0.557
ENSLCAP00010001523	ncor1	ENSLCAP00010001523	ENSLCAP00010041303	V-ski avian sarcoma viral oncogene homolog a.	Uncharacterized protein.	0.747
ENSLCAP00010001523	rps27a	ENSLCAP00010001523	ENSLCAP00010005493	V-ski avian sarcoma viral oncogene homolog a.	Ubiquitin-like domain-containing protein.	0.643
ENSLCAP00010001523	skil	ENSLCAP00010001523	ENSLCAP00010033417	V-ski avian sarcoma viral oncogene homolog a.	c-SKI_SMAD_bind domain-containing protein.	0.724
ENSLCAP00010001523	smad3	ENSLCAP00010001523	ENSLCAP00010026768	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	snw1	ENSLCAP00010001523	ENSLCAP00010021658	V-ski avian sarcoma viral oncogene homolog a.	SKIP_SNW domain-containing protein.	0.458
ENSLCAP00010001596	ENSLCAP00010001523	ENSLCAP00010001596	ENSLCAP00010001523	Mothers against decapentaplegic homolog.	V-ski avian sarcoma viral oncogene homolog a.	0.922
ENSLCAP00010001596	ENSLCAP00010006036	ENSLCAP00010001596	ENSLCAP00010006036	Mothers against decapentaplegic homolog.	Homeobox domain-containing protein.	0.454
ENSLCAP00010001596	ENSLCAP00010010391	ENSLCAP00010001596	ENSLCAP00010010391	Mothers against decapentaplegic homolog.	Neural precursor cell expressed, developmentally down-regulated 4-like.	0.590
ENSLCAP00010001596	ENSLCAP00010046672	ENSLCAP00010001596	ENSLCAP00010046672	Mothers against decapentaplegic homolog.	Ubiquitin-like domain-containing protein.	0.497
ENSLCAP00010001596	ENSLCAP00010050805	ENSLCAP00010001596	ENSLCAP00010050805	Mothers against decapentaplegic homolog.	Nuclear receptor corepressor 2.	0.508