27 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108878427	Uncharacterized protein. (395 aa)
	LOC108898240	Uncharacterized protein. (364 aa)
	ENSLCAP00010008403	Uncharacterized protein; Belongs to the peptidase C14A family. (480 aa)
	casp7	Uncharacterized protein; Belongs to the peptidase C14A family. (316 aa)
	Scin	Scinderin. (763 aa)
	casp6	Uncharacterized protein; Belongs to the peptidase C14A family. (301 aa)
	ENSLCAP00010011478	Adducin 1 (alpha). (821 aa)
	ENSLCAP00010016110	Capping protein (actin filament), gelsolin-like b. (352 aa)
	LOC108898943	Uncharacterized protein. (522 aa)
	LOC108873033	Microtubule-associated protein. (1439 aa)
	LOC108883701	Uncharacterized protein. (726 aa)
	gsn	Uncharacterized protein. (790 aa)
	ENSLCAP00010047396	Uncharacterized protein. (669 aa)
	ENSLCAP00010045479	Microtubule-associated protein. (377 aa)
	ENSLCAP00010045472	Uncharacterized protein. (1347 aa)
	vim	IF rod domain-containing protein; Belongs to the intermediate filament family. (460 aa)
	ENSLCAP00010044598	DUF4203 domain-containing protein. (322 aa)
	ENSLCAP00010044348	Uncharacterized protein. (365 aa)
	LOC108880424	DUF4203 domain-containing protein. (388 aa)
	ENSLCAP00010043062	Microtubule-associated protein. (311 aa)
	LOC108877809	Uncharacterized protein. (393 aa)
	ENSLCAP00010035178	DUF4203 domain-containing protein. (249 aa)
	ENSLCAP00010032888	Microtubule-associated protein. (215 aa)
	ENSLCAP00010028147	Spectrin alpha, non-erythrocytic 1. (2399 aa)
	gas2	Uncharacterized protein. (337 aa)
	LOC108878964	Uncharacterized protein. (763 aa)
	LOC108873152	DUF4203 domain-containing protein. (440 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010008403	casp6	ENSLCAP00010008403	ENSLCAP00010010915	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.692
ENSLCAP00010008403	casp7	ENSLCAP00010008403	ENSLCAP00010008781	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.570
ENSLCAP00010008403	vim	ENSLCAP00010008403	ENSLCAP00010045458	Uncharacterized protein; Belongs to the peptidase C14A family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.461
ENSLCAP00010016110	casp7	ENSLCAP00010016110	ENSLCAP00010008781	Capping protein (actin filament), gelsolin-like b.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.411
ENSLCAP00010028147	casp6	ENSLCAP00010028147	ENSLCAP00010010915	Spectrin alpha, non-erythrocytic 1.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.534
ENSLCAP00010028147	casp7	ENSLCAP00010028147	ENSLCAP00010008781	Spectrin alpha, non-erythrocytic 1.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.553
ENSLCAP00010032888	ENSLCAP00010045472	ENSLCAP00010032888	ENSLCAP00010045472	Microtubule-associated protein.	Uncharacterized protein.	0.719
ENSLCAP00010032888	casp6	ENSLCAP00010032888	ENSLCAP00010010915	Microtubule-associated protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.406
ENSLCAP00010032888	casp7	ENSLCAP00010032888	ENSLCAP00010008781	Microtubule-associated protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.452
ENSLCAP00010043062	ENSLCAP00010045472	ENSLCAP00010043062	ENSLCAP00010045472	Microtubule-associated protein.	Uncharacterized protein.	0.767
ENSLCAP00010043062	casp6	ENSLCAP00010043062	ENSLCAP00010010915	Microtubule-associated protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.406
ENSLCAP00010043062	casp7	ENSLCAP00010043062	ENSLCAP00010008781	Microtubule-associated protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.452
ENSLCAP00010045472	ENSLCAP00010032888	ENSLCAP00010045472	ENSLCAP00010032888	Uncharacterized protein.	Microtubule-associated protein.	0.719
ENSLCAP00010045472	ENSLCAP00010043062	ENSLCAP00010045472	ENSLCAP00010043062	Uncharacterized protein.	Microtubule-associated protein.	0.767
ENSLCAP00010045472	ENSLCAP00010045479	ENSLCAP00010045472	ENSLCAP00010045479	Uncharacterized protein.	Microtubule-associated protein.	0.899
ENSLCAP00010045472	casp6	ENSLCAP00010045472	ENSLCAP00010010915	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.406
ENSLCAP00010045472	casp7	ENSLCAP00010045472	ENSLCAP00010008781	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.452
ENSLCAP00010045479	ENSLCAP00010045472	ENSLCAP00010045479	ENSLCAP00010045472	Microtubule-associated protein.	Uncharacterized protein.	0.899
ENSLCAP00010045479	casp6	ENSLCAP00010045479	ENSLCAP00010010915	Microtubule-associated protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.406
ENSLCAP00010045479	casp7	ENSLCAP00010045479	ENSLCAP00010008781	Microtubule-associated protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.452