18 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108872939	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1161 aa)
	LOC108874116	Uncharacterized protein. (354 aa)
	ENSLCAP00010005935	Guanine nucleotide binding protein (G protein), q polypeptide. (374 aa)
	ENSLCAP00010006438	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family. (451 aa)
	acsl3	AMP-binding domain-containing protein. (738 aa)
	acsl4	AMP-binding domain-containing protein. (712 aa)
	snx19	Uncharacterized protein. (981 aa)
	PLCB2	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1152 aa)
	PLCB1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1244 aa)
	LOC108874918	Uncharacterized protein. (402 aa)
	ENSLCAP00010032878	Acyl-CoA synthetase long chain family member 3b. (716 aa)
	ENSLCAP00010033852	Si:dkey-211g8.9. (295 aa)
	LOC108893282	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1265 aa)
	LOC108881409	Uncharacterized protein. (369 aa)
	LOC108881412	Uncharacterized protein. (402 aa)
	LOC108878372	Uncharacterized protein. (354 aa)
	ENSLCAP00010060883	Uncharacterized protein. (382 aa)
	ENSLCAP00010002252	Sorting nexin 19a. (896 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010005935	LOC108872939	ENSLCAP00010005935	ENSLCAP00010005230	Guanine nucleotide binding protein (G protein), q polypeptide.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.954
ENSLCAP00010005935	LOC108881412	ENSLCAP00010005935	ENSLCAP00010058221	Guanine nucleotide binding protein (G protein), q polypeptide.	Uncharacterized protein.	0.901
ENSLCAP00010005935	LOC108893282	ENSLCAP00010005935	ENSLCAP00010039265	Guanine nucleotide binding protein (G protein), q polypeptide.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.954
ENSLCAP00010005935	PLCB1	ENSLCAP00010005935	ENSLCAP00010029340	Guanine nucleotide binding protein (G protein), q polypeptide.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.954
ENSLCAP00010005935	PLCB2	ENSLCAP00010005935	ENSLCAP00010024346	Guanine nucleotide binding protein (G protein), q polypeptide.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.566
ENSLCAP00010032878	acsl3	ENSLCAP00010032878	ENSLCAP00010006748	Acyl-CoA synthetase long chain family member 3b.	AMP-binding domain-containing protein.	0.604
ENSLCAP00010032878	acsl4	ENSLCAP00010032878	ENSLCAP00010009919	Acyl-CoA synthetase long chain family member 3b.	AMP-binding domain-containing protein.	0.606
ENSLCAP00010033852	ENSLCAP00010060883	ENSLCAP00010033852	ENSLCAP00010060883	Si:dkey-211g8.9.	Uncharacterized protein.	0.446
ENSLCAP00010033852	LOC108874918	ENSLCAP00010033852	ENSLCAP00010031180	Si:dkey-211g8.9.	Uncharacterized protein.	0.446
ENSLCAP00010033852	LOC108878372	ENSLCAP00010033852	ENSLCAP00010060882	Si:dkey-211g8.9.	Uncharacterized protein.	0.446
ENSLCAP00010033852	LOC108881409	ENSLCAP00010033852	ENSLCAP00010058210	Si:dkey-211g8.9.	Uncharacterized protein.	0.566
ENSLCAP00010033852	LOC108881412	ENSLCAP00010033852	ENSLCAP00010058221	Si:dkey-211g8.9.	Uncharacterized protein.	0.446
ENSLCAP00010060883	ENSLCAP00010033852	ENSLCAP00010060883	ENSLCAP00010033852	Uncharacterized protein.	Si:dkey-211g8.9.	0.446
ENSLCAP00010060883	LOC108872939	ENSLCAP00010060883	ENSLCAP00010005230	Uncharacterized protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.629
ENSLCAP00010060883	LOC108881409	ENSLCAP00010060883	ENSLCAP00010058210	Uncharacterized protein.	Uncharacterized protein.	0.475
ENSLCAP00010060883	LOC108893282	ENSLCAP00010060883	ENSLCAP00010039265	Uncharacterized protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.629
ENSLCAP00010060883	PLCB1	ENSLCAP00010060883	ENSLCAP00010029340	Uncharacterized protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.629
ENSLCAP00010060883	PLCB2	ENSLCAP00010060883	ENSLCAP00010024346	Uncharacterized protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.629
LOC108872939	ENSLCAP00010005935	ENSLCAP00010005230	ENSLCAP00010005935	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Guanine nucleotide binding protein (G protein), q polypeptide.	0.954
LOC108872939	ENSLCAP00010060883	ENSLCAP00010005230	ENSLCAP00010060883	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Uncharacterized protein.	0.629