9 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010055640	annotation not available (277 aa)
	ccna2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (436 aa)
	ENSLCAP00010055815	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (285 aa)
	LOC108900426	E2F_TDP domain-containing protein. (329 aa)
	ccna1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (416 aa)
	cdk2-2	Cyclin-dependent kinase 2. (298 aa)
	cdk2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (298 aa)
	e2f1	E2F_TDP domain-containing protein. (454 aa)
	E2F3	E2F_TDP domain-containing protein. (443 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E2F3	ENSLCAP00010055640	ENSLCAP00010003530	ENSLCAP00010055640	E2F_TDP domain-containing protein.	annotation not available	0.439
E2F3	ENSLCAP00010055815	ENSLCAP00010003530	ENSLCAP00010055815	E2F_TDP domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.439
E2F3	ccna1	ENSLCAP00010003530	ENSLCAP00010047573	E2F_TDP domain-containing protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.970
E2F3	ccna2	ENSLCAP00010003530	ENSLCAP00010056469	E2F_TDP domain-containing protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.970
E2F3	cdk2	ENSLCAP00010003530	ENSLCAP00010014041	E2F_TDP domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.941
E2F3	cdk2-2	ENSLCAP00010003530	ENSLCAP00010044385	E2F_TDP domain-containing protein.	Cyclin-dependent kinase 2.	0.439
E2F3	e2f1	ENSLCAP00010003530	ENSLCAP00010013681	E2F_TDP domain-containing protein.	E2F_TDP domain-containing protein.	0.660
ENSLCAP00010055640	E2F3	ENSLCAP00010055640	ENSLCAP00010003530	annotation not available	E2F_TDP domain-containing protein.	0.439
ENSLCAP00010055640	LOC108900426	ENSLCAP00010055640	ENSLCAP00010050788	annotation not available	E2F_TDP domain-containing protein.	0.439
ENSLCAP00010055640	ccna1	ENSLCAP00010055640	ENSLCAP00010047573	annotation not available	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.872
ENSLCAP00010055640	ccna2	ENSLCAP00010055640	ENSLCAP00010056469	annotation not available	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.855
ENSLCAP00010055640	e2f1	ENSLCAP00010055640	ENSLCAP00010013681	annotation not available	E2F_TDP domain-containing protein.	0.597
ENSLCAP00010055815	E2F3	ENSLCAP00010055815	ENSLCAP00010003530	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	E2F_TDP domain-containing protein.	0.439
ENSLCAP00010055815	LOC108900426	ENSLCAP00010055815	ENSLCAP00010050788	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	E2F_TDP domain-containing protein.	0.439
ENSLCAP00010055815	ccna1	ENSLCAP00010055815	ENSLCAP00010047573	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.872
ENSLCAP00010055815	ccna2	ENSLCAP00010055815	ENSLCAP00010056469	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.855
ENSLCAP00010055815	e2f1	ENSLCAP00010055815	ENSLCAP00010013681	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	E2F_TDP domain-containing protein.	0.597
LOC108900426	ENSLCAP00010055640	ENSLCAP00010050788	ENSLCAP00010055640	E2F_TDP domain-containing protein.	annotation not available	0.439
LOC108900426	ENSLCAP00010055815	ENSLCAP00010050788	ENSLCAP00010055815	E2F_TDP domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.439
LOC108900426	ccna1	ENSLCAP00010050788	ENSLCAP00010047573	E2F_TDP domain-containing protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.970