43 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010031506	Uncharacterized protein. (208 aa)
	ppme1	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated. (385 aa)
	Ppp4r1	WRNPLPNID domain-containing protein. (999 aa)
	LOC108882943	Serine/threonine-protein phosphatase. (318 aa)
	ppp4r4	Uncharacterized protein. (954 aa)
	fnbp4	Uncharacterized protein. (899 aa)
	cdk2-2	Cyclin-dependent kinase 2. (298 aa)
	ccna1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (416 aa)
	Ppp2r3c	Protein phosphatase 2, regulatory subunit B'', gamma. (445 aa)
	LOC108894427	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (438 aa)
	ccnb1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (404 aa)
	ENSLCAP00010050130	Vac14_Fab1_bd domain-containing protein. (307 aa)
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
	cdk7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (343 aa)
	lcmt1	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family. (340 aa)
	ccnh	CYCLIN domain-containing protein; Belongs to the cyclin family. (324 aa)
	LOC108882517	Importin N-terminal domain-containing protein. (1066 aa)
	LOC108878312	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (471 aa)
	ccna2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (436 aa)
	ENSLCAP00010055815	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (285 aa)
	ENSLCAP00010055640	annotation not available (277 aa)
	ENSLCAP00010053907	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing. (1144 aa)
	ccnb3	Uncharacterized protein; Belongs to the cyclin family. (431 aa)
	ENSLCAP00010001748	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated. (360 aa)
	ENSLCAP00010003587	Exportin 1 (CRM1 homolog, yeast) b. (1106 aa)
	ENSLCAP00010004286	Wee1-like protein kinase. (540 aa)
	foxm1	Fork-head domain-containing protein. (678 aa)
	wee1	Wee1-like protein kinase. (620 aa)
	CCNB2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (397 aa)
	ENSLCAP00010009839	Cyclin B2; Belongs to the cyclin family. (315 aa)
	ENSLCAP00010013869	Protein kinase, membrane associated tyrosine/threonine 1; Belongs to the protein kinase superfamily. (436 aa)
	cdk2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (298 aa)
	ENSLCAP00010015456	Si:ch211-132b12.8; Belongs to the cyclin family. (361 aa)
	LOC108882808	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (503 aa)
	Wdr41	WD_REPEATS_REGION domain-containing protein. (160 aa)
	PPP2R3B	Protein phosphatase 2 regulatory subunit B''beta. (578 aa)
	ENSLCAP00010027257	Protein phosphatase 2, regulatory subunit B'', alpha. (510 aa)
	ENSLCAP00010027262	Uncharacterized protein. (956 aa)
	Cdc25b	Rhodanese domain-containing protein. (385 aa)
	Cdk1	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily. (331 aa)
	ppp2ca	Serine/threonine-protein phosphatase. (309 aa)
	LOC108875225	Serine/threonine-protein phosphatase. (309 aa)
	LOC108895267	Uncharacterized protein. (618 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNB2	Cdc25b	ENSLCAP00010009216	ENSLCAP00010028000	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Rhodanese domain-containing protein.	0.809
CCNB2	Cdk1	ENSLCAP00010009216	ENSLCAP00010028139	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.987
CCNB2	ENSLCAP00010003587	ENSLCAP00010009216	ENSLCAP00010003587	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Exportin 1 (CRM1 homolog, yeast) b.	0.566
CCNB2	ENSLCAP00010004286	ENSLCAP00010009216	ENSLCAP00010004286	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Wee1-like protein kinase.	0.783
CCNB2	ENSLCAP00010013869	ENSLCAP00010009216	ENSLCAP00010013869	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase, membrane associated tyrosine/threonine 1; Belongs to the protein kinase superfamily.	0.787
CCNB2	ENSLCAP00010031506	ENSLCAP00010009216	ENSLCAP00010031506	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.532
CCNB2	ENSLCAP00010055640	ENSLCAP00010009216	ENSLCAP00010055640	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	annotation not available	0.783
CCNB2	ENSLCAP00010055815	ENSLCAP00010009216	ENSLCAP00010055815	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.783
CCNB2	LOC108875225	ENSLCAP00010009216	ENSLCAP00010030121	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Serine/threonine-protein phosphatase.	0.415
CCNB2	LOC108878312	ENSLCAP00010009216	ENSLCAP00010058338	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.532
CCNB2	LOC108882517	ENSLCAP00010009216	ENSLCAP00010059484	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Importin N-terminal domain-containing protein.	0.566
CCNB2	LOC108882808	ENSLCAP00010009216	ENSLCAP00010015551	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.532
CCNB2	LOC108882943	ENSLCAP00010009216	ENSLCAP00010033428	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Serine/threonine-protein phosphatase.	0.415
CCNB2	LOC108894427	ENSLCAP00010009216	ENSLCAP00010048297	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.532
CCNB2	ccna1	ENSLCAP00010009216	ENSLCAP00010047573	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.814
CCNB2	ccna2	ENSLCAP00010009216	ENSLCAP00010056469	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.811
CCNB2	ccnb1	ENSLCAP00010009216	ENSLCAP00010049414	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.931
CCNB2	ccnb3	ENSLCAP00010009216	ENSLCAP00010053027	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.921
CCNB2	ccnh	ENSLCAP00010009216	ENSLCAP00010059953	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.586
CCNB2	cdk2	ENSLCAP00010009216	ENSLCAP00010014041	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.783