20 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010055640	annotation not available (277 aa)
	LOC108875857	Uncharacterized protein. (306 aa)
	ENSLCAP00010055815	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (285 aa)
	LOC108899546	Uncharacterized protein. (487 aa)
	gfi1b	Uncharacterized protein. (354 aa)
	ENSLCAP00010047716	Kruppel-like factor 5 like. (230 aa)
	cdk4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (306 aa)
	cdk2-2	Cyclin-dependent kinase 2. (298 aa)
	LOC108889691	ETS domain-containing protein. (277 aa)
	ENSLCAP00010038762	Uncharacterized protein. (119 aa)
	myb	Uncharacterized protein. (655 aa)
	klf5	Uncharacterized protein. (509 aa)
	ENSLCAP00010022960	Uncharacterized protein. (101 aa)
	cebpa	CCAAT/enhancer-binding protein. (304 aa)
	fli1	Uncharacterized protein. (458 aa)
	cdk2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (298 aa)
	LOC108898243	BZIP domain-containing protein. (215 aa)
	ENSLCAP00010005352	Retinoid X receptor, alpha a. (455 aa)
	LOC108880494	Uncharacterized protein. (513 aa)
	ENSLCAP00010048933	Growth factor independent 1A transcription repressor a. (302 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010038762	ENSLCAP00010055640	ENSLCAP00010038762	ENSLCAP00010055640	Uncharacterized protein.	annotation not available	0.672
ENSLCAP00010038762	ENSLCAP00010055815	ENSLCAP00010038762	ENSLCAP00010055815	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.672
ENSLCAP00010038762	LOC108898243	ENSLCAP00010038762	ENSLCAP00010006083	Uncharacterized protein.	BZIP domain-containing protein.	0.520
ENSLCAP00010038762	cdk2	ENSLCAP00010038762	ENSLCAP00010014041	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.672
ENSLCAP00010038762	cdk2-2	ENSLCAP00010038762	ENSLCAP00010044385	Uncharacterized protein.	Cyclin-dependent kinase 2.	0.672
ENSLCAP00010038762	cdk4	ENSLCAP00010038762	ENSLCAP00010044799	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.692
ENSLCAP00010038762	cebpa	ENSLCAP00010038762	ENSLCAP00010016510	Uncharacterized protein.	CCAAT/enhancer-binding protein.	0.624
ENSLCAP00010048933	cebpa	ENSLCAP00010048933	ENSLCAP00010016510	Growth factor independent 1A transcription repressor a.	CCAAT/enhancer-binding protein.	0.409
ENSLCAP00010055640	ENSLCAP00010038762	ENSLCAP00010055640	ENSLCAP00010038762	annotation not available	Uncharacterized protein.	0.672
ENSLCAP00010055640	LOC108898243	ENSLCAP00010055640	ENSLCAP00010006083	annotation not available	BZIP domain-containing protein.	0.530
ENSLCAP00010055640	cebpa	ENSLCAP00010055640	ENSLCAP00010016510	annotation not available	CCAAT/enhancer-binding protein.	0.575
ENSLCAP00010055815	ENSLCAP00010038762	ENSLCAP00010055815	ENSLCAP00010038762	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.672
ENSLCAP00010055815	LOC108898243	ENSLCAP00010055815	ENSLCAP00010006083	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	BZIP domain-containing protein.	0.530
ENSLCAP00010055815	cebpa	ENSLCAP00010055815	ENSLCAP00010016510	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CCAAT/enhancer-binding protein.	0.575
LOC108875857	cebpa	ENSLCAP00010052385	ENSLCAP00010016510	Uncharacterized protein.	CCAAT/enhancer-binding protein.	0.409
LOC108889691	LOC108898243	ENSLCAP00010042244	ENSLCAP00010006083	ETS domain-containing protein.	BZIP domain-containing protein.	0.641
LOC108889691	LOC108899546	ENSLCAP00010042244	ENSLCAP00010003795	ETS domain-containing protein.	Uncharacterized protein.	0.612
LOC108889691	cebpa	ENSLCAP00010042244	ENSLCAP00010016510	ETS domain-containing protein.	CCAAT/enhancer-binding protein.	0.641
LOC108889691	fli1	ENSLCAP00010042244	ENSLCAP00010016391	ETS domain-containing protein.	Uncharacterized protein.	0.731
LOC108889691	myb	ENSLCAP00010042244	ENSLCAP00010035503	ETS domain-containing protein.	Uncharacterized protein.	0.807