STRINGSTRING
LOC108891070 LOC108891070 LOC108876858 LOC108876858 ENSLCAP00010028258 ENSLCAP00010028258 LOC108889869 LOC108889869 LOC108902525 LOC108902525 nmur1 nmur1 RHO RHO LOC108873762 LOC108873762
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108891070G_PROTEIN_RECEP_F1_2 domain-containing protein. (385 aa)
LOC108876858G_PROTEIN_RECEP_F1_2 domain-containing protein. (365 aa)
ENSLCAP00010028258Rhodopsin. (331 aa)
LOC108889869Rhodopsin. (353 aa)
LOC108902525G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (425 aa)
nmur1G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (451 aa)
RHORhodopsin. (354 aa)
LOC108873762G_PROTEIN_RECEP_F1_2 domain-containing protein. (385 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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