STRINGSTRING
LOC108892827 LOC108892827 hinfp hinfp brca1 brca1 LOC108884044 LOC108884044 pcna pcna hdac1 hdac1 cdk2 cdk2 ENSLCAP00010014063 ENSLCAP00010014063 LOC108873773 LOC108873773 Sirt1 Sirt1 LOC108882658 LOC108882658 ENSLCAP00010018787 ENSLCAP00010018787 gapdh gapdh ENSLCAP00010026315 ENSLCAP00010026315 ENSLCAP00010026403 ENSLCAP00010026403 ENSLCAP00010027354 ENSLCAP00010027354 ENSLCAP00010029507 ENSLCAP00010029507 ENSLCAP00010029530 ENSLCAP00010029530 sirt2 sirt2 sirt6 sirt6 ENSLCAP00010041597 ENSLCAP00010041597 cdk2-2 cdk2-2 HDAC2 HDAC2 ENSLCAP00010050497 ENSLCAP00010050497 Hdac3 Hdac3 ENSLCAP00010055835 ENSLCAP00010055835 LOC108889295 LOC108889295 LOC108872509 LOC108872509 LOC108887082 LOC108887082
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108892827Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1098 aa)
hinfpUncharacterized protein. (492 aa)
brca1Uncharacterized protein. (1411 aa)
LOC108884044Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (962 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
hdac1Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (482 aa)
cdk2Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (298 aa)
ENSLCAP00010014063Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (945 aa)
LOC108873773LisH domain-containing protein. (1411 aa)
Sirt1Deacetylase sirtuin-type domain-containing protein. (705 aa)
LOC108882658Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1008 aa)
ENSLCAP00010018787Histone H3; Belongs to the histone H3 family. (117 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (339 aa)
ENSLCAP00010026315Histone H3; Belongs to the histone H3 family. (98 aa)
ENSLCAP00010026403Histone H3; Belongs to the histone H3 family. (107 aa)
ENSLCAP00010027354Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (481 aa)
ENSLCAP00010029507Histone H3; Belongs to the histone H3 family. (125 aa)
ENSLCAP00010029530Histone H3; Belongs to the histone H3 family. (98 aa)
sirt2NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (381 aa)
sirt6Deacetylase sirtuin-type domain-containing protein. (351 aa)
ENSLCAP00010041597Histone H3; Belongs to the histone H3 family. (88 aa)
cdk2-2Cyclin-dependent kinase 2. (298 aa)
HDAC2Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (507 aa)
ENSLCAP00010050497Histone H3; Belongs to the histone H3 family. (90 aa)
Hdac3Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (459 aa)
ENSLCAP00010055835Thymine DNA glycosylase, tandem duplicate 2. (300 aa)
LOC108889295UDG domain-containing protein. (451 aa)
LOC108872509Histone H3; Belongs to the histone H3 family. (136 aa)
LOC108887082Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1112 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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