24 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ccnb1	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (404 aa)
	mgst3	Uncharacterized protein. (153 aa)
	Cebpd	CCAAT/enhancer-binding protein. (290 aa)
	LOC108879443	Arrestin_C domain-containing protein. (396 aa)
	dhrs1	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (310 aa)
	LOC108876156	Uncharacterized protein. (521 aa)
	ell2	Uncharacterized protein. (688 aa)
	Gpx3	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (138 aa)
	LOC108889988	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (142 aa)
	ENSLCAP00010020141	Uncharacterized protein. (239 aa)
	LOC108884718	Arrestin_C domain-containing protein. (409 aa)
	LOC108883494	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (707 aa)
	slc6a6	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (628 aa)
	rpl34	Uncharacterized protein. (117 aa)
	LOC108873145	Myostatin-2. (359 aa)
	ddit4	Uncharacterized protein. (226 aa)
	ENSLCAP00010045989	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (142 aa)
	LOC108875664	Thioredoxin domain-containing protein. (197 aa)
	ENSLCAP00010047128	Epidermal growth factor. (1034 aa)
	ENSLCAP00010048462	Aurora kinase B; Belongs to the protein kinase superfamily. (335 aa)
	mstn	TGF_BETA_2 domain-containing protein. (376 aa)
	LOC108883812	Thioredoxin domain-containing protein. (198 aa)
	ENSLCAP00010053475	Uncharacterized protein. (826 aa)
	ccna2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (436 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cebpd	ddit4	ENSLCAP00010011216	ENSLCAP00010043638	CCAAT/enhancer-binding protein.	Uncharacterized protein.	0.418
ENSLCAP00010020141	ENSLCAP00010045989	ENSLCAP00010020141	ENSLCAP00010045989	Uncharacterized protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.476
ENSLCAP00010020141	ENSLCAP00010048462	ENSLCAP00010020141	ENSLCAP00010048462	Uncharacterized protein.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.615
ENSLCAP00010020141	LOC108875664	ENSLCAP00010020141	ENSLCAP00010046131	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.536
ENSLCAP00010020141	LOC108876156	ENSLCAP00010020141	ENSLCAP00010015356	Uncharacterized protein.	Uncharacterized protein.	0.534
ENSLCAP00010020141	LOC108879443	ENSLCAP00010020141	ENSLCAP00010012226	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.576
ENSLCAP00010020141	LOC108883812	ENSLCAP00010020141	ENSLCAP00010052885	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.480
ENSLCAP00010020141	LOC108884718	ENSLCAP00010020141	ENSLCAP00010025019	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.576
ENSLCAP00010020141	ddit4	ENSLCAP00010020141	ENSLCAP00010043638	Uncharacterized protein.	Uncharacterized protein.	0.904
ENSLCAP00010020141	dhrs1	ENSLCAP00010020141	ENSLCAP00010014399	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.533
ENSLCAP00010020141	mgst3	ENSLCAP00010020141	ENSLCAP00010003064	Uncharacterized protein.	Uncharacterized protein.	0.480
ENSLCAP00010045989	ENSLCAP00010020141	ENSLCAP00010045989	ENSLCAP00010020141	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Uncharacterized protein.	0.476
ENSLCAP00010045989	ENSLCAP00010048462	ENSLCAP00010045989	ENSLCAP00010048462	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.408
ENSLCAP00010045989	LOC108875664	ENSLCAP00010045989	ENSLCAP00010046131	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Thioredoxin domain-containing protein.	0.621
ENSLCAP00010045989	LOC108876156	ENSLCAP00010045989	ENSLCAP00010015356	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Uncharacterized protein.	0.415
ENSLCAP00010045989	LOC108879443	ENSLCAP00010045989	ENSLCAP00010012226	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Arrestin_C domain-containing protein.	0.517
ENSLCAP00010045989	LOC108883812	ENSLCAP00010045989	ENSLCAP00010052885	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Thioredoxin domain-containing protein.	0.548
ENSLCAP00010045989	LOC108884718	ENSLCAP00010045989	ENSLCAP00010025019	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Arrestin_C domain-containing protein.	0.517
ENSLCAP00010045989	ddit4	ENSLCAP00010045989	ENSLCAP00010043638	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Uncharacterized protein.	0.476
ENSLCAP00010045989	dhrs1	ENSLCAP00010045989	ENSLCAP00010014399	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.439