31 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010003823	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (511 aa)
	fstl3	Uncharacterized protein. (295 aa)
	LOC108886138	HMG box domain-containing protein. (461 aa)
	ALDH1A1	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family. (536 aa)
	RARB	Retinoic acid receptor beta. (481 aa)
	ENSLCAP00010052783	Cytochrome P450, family 11, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family. (605 aa)
	ENSLCAP00010052595	Estrogen receptor 2a. (589 aa)
	LOC108878356	DM domain-containing protein. (323 aa)
	wnt4	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (352 aa)
	Gnrh1	Uncharacterized protein. (99 aa)
	LOC108902785	Uncharacterized protein; Belongs to the cytochrome P450 family. (512 aa)
	NR3C1	Uncharacterized protein. (813 aa)
	AMHR2	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (473 aa)
	LOC108882924	Uncharacterized protein. (781 aa)
	Aldh1a2	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family. (523 aa)
	fstl4	Uncharacterized protein. (855 aa)
	ENSLCAP00010028099	Cytochrome P450, family 17, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family. (504 aa)
	stra6	Uncharacterized protein. (664 aa)
	rara	Uncharacterized protein. (455 aa)
	ENSLCAP00010019178	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (598 aa)
	Aldh1a3	Aldehyde dehydrogenase 1 family, member A3; Belongs to the aldehyde dehydrogenase family. (512 aa)
	ENSLCAP00010015991	Follistatin-like 5. (835 aa)
	ENSLCAP00010014965	Hydroxysteroid (11-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (391 aa)
	hsd17b1	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (290 aa)
	ENSLCAP00010013378	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (623 aa)
	ENSLCAP00010012317	Hydroxysteroid (17-beta) dehydrogenase 3; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (325 aa)
	SLC6A20	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (600 aa)
	LOC108880750	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (358 aa)
	ENSLCAP00010010334	Estrogen receptor 2b. (661 aa)
	LOC108887913	Uncharacterized protein; Belongs to the cytochrome P450 family. (521 aa)
	rspo1	Uncharacterized protein. (293 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH1A1	Aldh1a2	ENSLCAP00010055772	ENSLCAP00010029447	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	0.901
ALDH1A1	Aldh1a3	ENSLCAP00010055772	ENSLCAP00010018460	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase 1 family, member A3; Belongs to the aldehyde dehydrogenase family.	0.901
ALDH1A1	LOC108878356	ENSLCAP00010055772	ENSLCAP00010050600	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	DM domain-containing protein.	0.404
ALDH1A1	LOC108902785	ENSLCAP00010055772	ENSLCAP00010043203	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.966
ALDH1A1	RARB	ENSLCAP00010055772	ENSLCAP00010053197	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Retinoic acid receptor beta.	0.493
ALDH1A1	rara	ENSLCAP00010055772	ENSLCAP00010023635	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.493
ALDH1A1	stra6	ENSLCAP00010055772	ENSLCAP00010024532	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.599
AMHR2	LOC108878356	ENSLCAP00010036327	ENSLCAP00010050600	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	DM domain-containing protein.	0.550
AMHR2	LOC108880750	ENSLCAP00010036327	ENSLCAP00010011111	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.515
AMHR2	LOC108882924	ENSLCAP00010036327	ENSLCAP00010032680	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein.	0.508
AMHR2	LOC108886138	ENSLCAP00010036327	ENSLCAP00010059914	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	HMG box domain-containing protein.	0.438
AMHR2	LOC108887913	ENSLCAP00010036327	ENSLCAP00010009847	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.427
AMHR2	NR3C1	ENSLCAP00010036327	ENSLCAP00010042574	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein.	0.508
AMHR2	RARB	ENSLCAP00010036327	ENSLCAP00010053197	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Retinoic acid receptor beta.	0.443
AMHR2	rara	ENSLCAP00010036327	ENSLCAP00010023635	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein.	0.443
AMHR2	rspo1	ENSLCAP00010036327	ENSLCAP00010007056	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Uncharacterized protein.	0.415
Aldh1a2	ALDH1A1	ENSLCAP00010029447	ENSLCAP00010055772	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	0.901
Aldh1a2	Aldh1a3	ENSLCAP00010029447	ENSLCAP00010018460	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase 1 family, member A3; Belongs to the aldehyde dehydrogenase family.	0.901
Aldh1a2	LOC108902785	ENSLCAP00010029447	ENSLCAP00010043203	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.964
Aldh1a2	RARB	ENSLCAP00010029447	ENSLCAP00010053197	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	Retinoic acid receptor beta.	0.562