26 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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protein homology

Your Input:
	GPX2	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (151 aa)
	ENSLCAP00010040525	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (112 aa)
	capzb	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (274 aa)
	eef1b2	Uncharacterized protein; Belongs to the EF-1-beta/EF-1-delta family. (227 aa)
	LOC108881368	Calreticulin. (426 aa)
	CASP3	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (259 aa)
	hspb1	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (203 aa)
	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (279 aa)
	LOC108884180	Calreticulin. (425 aa)
	LOC108882983	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (105 aa)
	LOC108877511	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	nop53	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (465 aa)
	LOC108896955	Calreticulin. (432 aa)
	Atp5b	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (550 aa)
	LOC108889988	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (142 aa)
	LOC108872926	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	LOC108883839	Thioredoxin domain-containing protein. (224 aa)
	Gpx8	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (229 aa)
	LOC108879035	Thioredoxin domain-containing protein. (235 aa)
	mmp9	Uncharacterized protein. (695 aa)
	gpx7	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (191 aa)
	Gpx3	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (138 aa)
	efhd2	Uncharacterized protein. (233 aa)
	rgn	SGL domain-containing protein. (300 aa)
	ENSLCAP00010045989	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (142 aa)
	ENSLCAP00010045396	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (112 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atp5b	LOC108879035	ENSLCAP00010025218	ENSLCAP00010017621	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Thioredoxin domain-containing protein.	0.504
Atp5b	LOC108883839	ENSLCAP00010025218	ENSLCAP00010003707	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Thioredoxin domain-containing protein.	0.529
Atp5b	capzb	ENSLCAP00010025218	ENSLCAP00010040064	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.421
Atp5b	eef1b2	ENSLCAP00010025218	ENSLCAP00010057310	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein; Belongs to the EF-1-beta/EF-1-delta family.	0.686
Atp5b	efhd2	ENSLCAP00010025218	ENSLCAP00010017152	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.427
Atp5b	hspb1	ENSLCAP00010025218	ENSLCAP00010037998	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	0.403
Atp5b	rgn	ENSLCAP00010025218	ENSLCAP00010057233	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	SGL domain-containing protein.	0.480
CASP3	ENSLCAP00010037861	ENSLCAP00010058548	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.902
CASP3	LOC108872926	ENSLCAP00010058548	ENSLCAP00010004699	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.713
CASP3	LOC108877511	ENSLCAP00010058548	ENSLCAP00010035605	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.713
CASP3	LOC108882983	ENSLCAP00010058548	ENSLCAP00010035884	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.713
ENSLCAP00010037861	CASP3	ENSLCAP00010037861	ENSLCAP00010058548	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	0.902
ENSLCAP00010037861	LOC108872926	ENSLCAP00010037861	ENSLCAP00010004699	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.714
ENSLCAP00010037861	LOC108877511	ENSLCAP00010037861	ENSLCAP00010035605	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.714
ENSLCAP00010037861	LOC108882983	ENSLCAP00010037861	ENSLCAP00010035884	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.714
ENSLCAP00010040525	ENSLCAP00010045989	ENSLCAP00010040525	ENSLCAP00010045989	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.636
ENSLCAP00010040525	GPX2	ENSLCAP00010040525	ENSLCAP00010041377	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.561
ENSLCAP00010040525	LOC108879035	ENSLCAP00010040525	ENSLCAP00010017621	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Thioredoxin domain-containing protein.	0.668
ENSLCAP00010040525	LOC108889988	ENSLCAP00010040525	ENSLCAP00010019032	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.634
ENSLCAP00010045396	Gpx8	ENSLCAP00010045396	ENSLCAP00010000872	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.610