5 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	brca1	Uncharacterized protein. (1411 aa)
	Mdc1	Uncharacterized protein. (2161 aa)
	Brca2	Breast cancer 2, early onset. (2872 aa)
	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (279 aa)
	CASP3	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (259 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Brca2	Mdc1	ENSLCAP00010030231	ENSLCAP00010009212	Breast cancer 2, early onset.	Uncharacterized protein.	0.627
Brca2	brca1	ENSLCAP00010030231	ENSLCAP00010006276	Breast cancer 2, early onset.	Uncharacterized protein.	0.999
CASP3	ENSLCAP00010037861	ENSLCAP00010058548	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.902
ENSLCAP00010037861	CASP3	ENSLCAP00010037861	ENSLCAP00010058548	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	0.902
Mdc1	Brca2	ENSLCAP00010009212	ENSLCAP00010030231	Uncharacterized protein.	Breast cancer 2, early onset.	0.627
Mdc1	brca1	ENSLCAP00010009212	ENSLCAP00010006276	Uncharacterized protein.	Uncharacterized protein.	0.909
brca1	Brca2	ENSLCAP00010006276	ENSLCAP00010030231	Uncharacterized protein.	Breast cancer 2, early onset.	0.999
brca1	Mdc1	ENSLCAP00010006276	ENSLCAP00010009212	Uncharacterized protein.	Uncharacterized protein.	0.909