58 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	adipor1	Uncharacterized protein. (376 aa)
	rps13	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	dhcr7	Uncharacterized protein. (478 aa)
	ccna2	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (436 aa)
	cdk2-2	Cyclin-dependent kinase 2. (298 aa)
	LOC108882499	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (573 aa)
	arrdc3	Arrestin_C domain-containing protein. (412 aa)
	Acacb	Acetyl-CoA carboxylase beta. (2327 aa)
	rpl13a	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (228 aa)
	FABP7	FABP domain-containing protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (141 aa)
	rps15	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (163 aa)
	ENSLCAP00010048042	ATP-binding cassette, sub-family C (CFTR/MRP), member 5. (1002 aa)
	PLK1	Serine/threonine-protein kinase PLK. (569 aa)
	LOC108900426	E2F_TDP domain-containing protein. (329 aa)
	ENSLCAP00010051639	Uncharacterized protein. (521 aa)
	PRKCA	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (672 aa)
	Irs2	Insulin receptor substrate 2b. (998 aa)
	ITM2A	BRICHOS domain-containing protein. (248 aa)
	ncapg	Cnd3 domain-containing protein. (1016 aa)
	E2F3	E2F_TDP domain-containing protein. (443 aa)
	smc4	Structural maintenance of chromosomes protein. (1325 aa)
	LOC108877296	Tr-type G domain-containing protein. (864 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	LOC108891223	HORMA domain-containing protein. (202 aa)
	LOC108894289	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (172 aa)
	ENSLCAP00010009278	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (263 aa)
	tpi1	Triosephosphate isomerase. (247 aa)
	mcm4	DNA helicase; Belongs to the MCM family. (860 aa)
	LOC108873580	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	mcm3	DNA helicase; Belongs to the MCM family. (815 aa)
	cdk2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (298 aa)
	rps11	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (170 aa)
	LOC108873226	Pro-opiomelanocortin-like. (219 aa)
	Rplp0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (305 aa)
	rpl10a	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	PPARA	Uncharacterized protein. (473 aa)
	acsbg2	AMP-binding domain-containing protein. (763 aa)
	Fabp3	Fatty acid binding protein 3, muscle and heart; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (161 aa)
	ncapd2	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1404 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (339 aa)
	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A-like. (202 aa)
	pgk1	Phosphoglycerate kinase. (417 aa)
	ENSLCAP00010026153	Eukaryotic elongation factor 2 kinase. (690 aa)
	SLC16A3	Solute carrier family 16 member 3. (487 aa)
	RPL12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (182 aa)
	LOC108891985	Stathmin; Belongs to the stathmin family. (179 aa)
	Cdk1	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily. (331 aa)
	cdc20	WD_REPEATS_REGION domain-containing protein. (502 aa)
	Stmn2	Uncharacterized protein. (257 aa)
	Jarid2	Jumonji, AT rich interactive domain 2b. (821 aa)
	zbtb16	Uncharacterized protein. (664 aa)
	fbxo32	F-box domain-containing protein. (357 aa)
	LOC108875304	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (334 aa)
	eef2	Tr-type G domain-containing protein. (862 aa)
	uchl1	Ubiquitin carboxyl-terminal hydrolase. (220 aa)
	Pdk4	Protein-serine/threonine kinase. (438 aa)
	bbox1	Uncharacterized protein. (454 aa)
	ENSLCAP00010044011	Si:ch211-234h8.7. (494 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Acacb	ENSLCAP00010026153	ENSLCAP00010060613	ENSLCAP00010026153	Acetyl-CoA carboxylase beta.	Eukaryotic elongation factor 2 kinase.	0.421
Acacb	ENSLCAP00010044011	ENSLCAP00010060613	ENSLCAP00010044011	Acetyl-CoA carboxylase beta.	Si:ch211-234h8.7.	0.521
Acacb	ENSLCAP00010048042	ENSLCAP00010060613	ENSLCAP00010048042	Acetyl-CoA carboxylase beta.	ATP-binding cassette, sub-family C (CFTR/MRP), member 5.	0.582
Acacb	Irs2	ENSLCAP00010060613	ENSLCAP00010003385	Acetyl-CoA carboxylase beta.	Insulin receptor substrate 2b.	0.408
Acacb	Jarid2	ENSLCAP00010060613	ENSLCAP00010030105	Acetyl-CoA carboxylase beta.	Jumonji, AT rich interactive domain 2b.	0.545
Acacb	LOC108875304	ENSLCAP00010060613	ENSLCAP00010037334	Acetyl-CoA carboxylase beta.	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	0.472
Acacb	PPARA	ENSLCAP00010060613	ENSLCAP00010016672	Acetyl-CoA carboxylase beta.	Uncharacterized protein.	0.512
Acacb	Pdk4	ENSLCAP00010060613	ENSLCAP00010039600	Acetyl-CoA carboxylase beta.	Protein-serine/threonine kinase.	0.534
Acacb	SLC16A3	ENSLCAP00010060613	ENSLCAP00010026234	Acetyl-CoA carboxylase beta.	Solute carrier family 16 member 3.	0.521
Acacb	fbxo32	ENSLCAP00010060613	ENSLCAP00010036999	Acetyl-CoA carboxylase beta.	F-box domain-containing protein.	0.429
Acacb	zbtb16	ENSLCAP00010060613	ENSLCAP00010031204	Acetyl-CoA carboxylase beta.	Uncharacterized protein.	0.405
Cdk1	E2F3	ENSLCAP00010028139	ENSLCAP00010003530	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	E2F_TDP domain-containing protein.	0.495
Cdk1	ENSLCAP00010051639	ENSLCAP00010028139	ENSLCAP00010051639	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.448
Cdk1	LOC108882499	ENSLCAP00010028139	ENSLCAP00010059323	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.831
Cdk1	LOC108891223	ENSLCAP00010028139	ENSLCAP00010008360	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	HORMA domain-containing protein.	0.736
Cdk1	LOC108900426	ENSLCAP00010028139	ENSLCAP00010050788	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	E2F_TDP domain-containing protein.	0.495
Cdk1	MAD2L1	ENSLCAP00010028139	ENSLCAP00010025498	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	Mitotic spindle assembly checkpoint protein MAD2A-like.	0.736
Cdk1	PLK1	ENSLCAP00010028139	ENSLCAP00010049256	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase PLK.	0.973
Cdk1	ccna2	ENSLCAP00010028139	ENSLCAP00010056469	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.992
Cdk1	cdc20	ENSLCAP00010028139	ENSLCAP00010028455	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	WD_REPEATS_REGION domain-containing protein.	0.826