5 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (609 aa)
	CASP3	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (259 aa)
	casp7	Uncharacterized protein; Belongs to the peptidase C14A family. (316 aa)
	gsdme	Uncharacterized protein. (476 aa)
	TLR2	Toll like receptor 2. (689 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP3	gsdme	ENSLCAP00010058548	ENSLCAP00010025592	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.674
TLR2	traf6	ENSLCAP00010041299	ENSLCAP00010039774	Toll like receptor 2.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.661
casp7	gsdme	ENSLCAP00010008781	ENSLCAP00010025592	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.712
gsdme	CASP3	ENSLCAP00010025592	ENSLCAP00010058548	Uncharacterized protein.	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	0.674
gsdme	casp7	ENSLCAP00010025592	ENSLCAP00010008781	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.712
traf6	TLR2	ENSLCAP00010039774	ENSLCAP00010041299	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Toll like receptor 2.	0.661