STRINGSTRING
LOC108889502 LOC108889502 LOC108900475 LOC108900475 ENSLCAP00010019944 ENSLCAP00010019944 LOC108889378 LOC108889378 RHO RHO gapdh gapdh LOC108889869 LOC108889869 ENSLCAP00010028258 ENSLCAP00010028258 LOC108882169 LOC108882169 wdr13 wdr13
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108889502Rhodopsin. (353 aa)
LOC108900475Fork-head domain-containing protein. (395 aa)
ENSLCAP00010019944Rhodopsin. (352 aa)
LOC108889378Rhodopsin. (345 aa)
RHORhodopsin. (354 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (339 aa)
LOC108889869Rhodopsin. (353 aa)
ENSLCAP00010028258Rhodopsin. (331 aa)
LOC108882169Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (559 aa)
wdr13Uncharacterized protein. (503 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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