STRINGSTRING
LOC108896914 LOC108896914 brca1 brca1 ENSLCAP00010023082 ENSLCAP00010023082 gapdh gapdh ENSLCAP00010031718 ENSLCAP00010031718 ENSLCAP00010034255 ENSLCAP00010034255 ENSLCAP00010037861 ENSLCAP00010037861 atrip atrip Dna2 Dna2 CASP3 CASP3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108896914B12-binding domain-containing protein. (741 aa)
brca1Uncharacterized protein. (1411 aa)
ENSLCAP00010023082Methylmalonyl CoA mutase. (726 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (339 aa)
ENSLCAP00010031718DNA topoisomerase II binding protein 1. (1435 aa)
ENSLCAP00010034255Exonuclease 1. (607 aa)
ENSLCAP00010037861Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (279 aa)
atripUncharacterized protein. (873 aa)
Dna2DNA replication helicase/nuclease 2. (1408 aa)
CASP3Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (259 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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