44 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HSPA8	Uncharacterized protein; Belongs to the heat shock protein 70 family. (640 aa)
	HSPA8-2	Uncharacterized protein; Belongs to the heat shock protein 70 family. (650 aa)
	Npepps	Aminopeptidase. (920 aa)
	LOC108896955	Calreticulin. (432 aa)
	LOC108876036	Uncharacterized protein. (200 aa)
	IAPP	CALCITONIN domain-containing protein. (131 aa)
	ENSLCAP00010031598	Uncharacterized protein; Belongs to the peptidase C1 family. (387 aa)
	hspb8	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (222 aa)
	LOC108884180	Calreticulin. (425 aa)
	furin	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (838 aa)
	ENSLCAP00010038404	Aminopeptidase. (947 aa)
	LOC108897454	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system. (116 aa)
	ENSLCAP00010038934	Aminopeptidase. (941 aa)
	ENSLCAP00010039973	ATG10 autophagy related 10 homolog (S. cerevisiae). (191 aa)
	LOC108875054	Uncharacterized protein; Belongs to the peptidase C1 family. (334 aa)
	ENSLCAP00010040711	Aminopeptidase. (883 aa)
	atg13	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (541 aa)
	atg7	Uncharacterized protein. (738 aa)
	ENSLCAP00010046340	Aminopeptidase. (984 aa)
	ENSLCAP00010046533	Aminopeptidase. (960 aa)
	dram1	Uncharacterized protein. (236 aa)
	ctsl	Uncharacterized protein; Belongs to the peptidase C1 family. (337 aa)
	LOC108877025	Uncharacterized protein; Belongs to the peptidase C1 family. (331 aa)
	ENSLCAP00010053946	Lysosomal-associated membrane protein 2. (264 aa)
	LOC108877023	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (330 aa)
	LOC108881368	Calreticulin. (426 aa)
	LOC108897722	Aminopeptidase. (965 aa)
	ENSLCAP00010058031	Aminopeptidase. (971 aa)
	LOC108878319	Aminopeptidase. (947 aa)
	ENSLCAP00010018655	Cathepsin Bb; Belongs to the peptidase C1 family. (352 aa)
	bag3	Uncharacterized protein. (572 aa)
	atg16l1	WD_REPEATS_REGION domain-containing protein. (644 aa)
	enpep	Aminopeptidase. (954 aa)
	Sqstm1	Sequestosome 1. (341 aa)
	gabarap	Uncharacterized protein. (122 aa)
	LOC108897292	Uncharacterized protein. (558 aa)
	casp6	Uncharacterized protein; Belongs to the peptidase C14A family. (301 aa)
	LOC108875435	Uncharacterized protein; Belongs to the peptidase C1 family. (325 aa)
	LOC108883175	Uncharacterized protein; Belongs to the peptidase C1 family. (341 aa)
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	LOC108877754	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (814 aa)
	cd83	Ig-like domain-containing protein. (225 aa)
	Wipi2	WD repeat domain, phosphoinositide interacting 2. (430 aa)
	Atg12	Uncharacterized protein. (127 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg12	ENSLCAP00010039973	ENSLCAP00010021188	ENSLCAP00010039973	Uncharacterized protein.	ATG10 autophagy related 10 homolog (S. cerevisiae).	0.885
Atg12	ENSLCAP00010053946	ENSLCAP00010021188	ENSLCAP00010053946	Uncharacterized protein.	Lysosomal-associated membrane protein 2.	0.408
Atg12	LOC108891182	ENSLCAP00010021188	ENSLCAP00010009358	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.998
Atg12	Sqstm1	ENSLCAP00010021188	ENSLCAP00010000923	Uncharacterized protein.	Sequestosome 1.	0.875
Atg12	Wipi2	ENSLCAP00010021188	ENSLCAP00010020957	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 2.	0.931
Atg12	atg13	ENSLCAP00010021188	ENSLCAP00010041989	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.684
Atg12	atg16l1	ENSLCAP00010021188	ENSLCAP00010005198	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.993
Atg12	atg7	ENSLCAP00010021188	ENSLCAP00010043910	Uncharacterized protein.	Uncharacterized protein.	0.999
Atg12	casp6	ENSLCAP00010021188	ENSLCAP00010010915	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.430
Atg12	gabarap	ENSLCAP00010021188	ENSLCAP00010015932	Uncharacterized protein.	Uncharacterized protein.	0.984
ENSLCAP00010018655	ENSLCAP00010031598	ENSLCAP00010018655	ENSLCAP00010031598	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.540
ENSLCAP00010018655	LOC108875054	ENSLCAP00010018655	ENSLCAP00010040400	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.543
ENSLCAP00010018655	LOC108875435	ENSLCAP00010018655	ENSLCAP00010010876	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.468
ENSLCAP00010018655	LOC108877023	ENSLCAP00010018655	ENSLCAP00010057012	Cathepsin Bb; Belongs to the peptidase C1 family.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.901
ENSLCAP00010018655	LOC108877025	ENSLCAP00010018655	ENSLCAP00010052616	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.472
ENSLCAP00010018655	LOC108883175	ENSLCAP00010018655	ENSLCAP00010009562	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.534
ENSLCAP00010018655	Sqstm1	ENSLCAP00010018655	ENSLCAP00010000923	Cathepsin Bb; Belongs to the peptidase C1 family.	Sequestosome 1.	0.501
ENSLCAP00010018655	ctsl	ENSLCAP00010018655	ENSLCAP00010050672	Cathepsin Bb; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.548
ENSLCAP00010031598	ENSLCAP00010018655	ENSLCAP00010031598	ENSLCAP00010018655	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Bb; Belongs to the peptidase C1 family.	0.540
ENSLCAP00010031598	LOC108877023	ENSLCAP00010031598	ENSLCAP00010057012	Uncharacterized protein; Belongs to the peptidase C1 family.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.531