STRINGSTRING
myf5 myf5 Igf1 Igf1 mstn mstn LOC108872574 LOC108872574 tgfb3 tgfb3 LOC108873145 LOC108873145 npy npy NPY NPY myog myog TGFB3 TGFB3 LOC108876160 LOC108876160 tgfb2 tgfb2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
myf5Myogenic factor. (240 aa)
Igf1Insulin-like growth factor 1. (186 aa)
mstnTGF_BETA_2 domain-containing protein. (376 aa)
LOC108872574Transforming growth factor beta; Belongs to the TGF-beta family. (420 aa)
tgfb3Transforming growth factor beta; Belongs to the TGF-beta family. (405 aa)
LOC108873145Myostatin-2. (359 aa)
npyUncharacterized protein. (114 aa)
NPYUncharacterized protein. (100 aa)
myogBHLH domain-containing protein. (258 aa)
TGFB3Transforming growth factor beta; Belongs to the TGF-beta family. (408 aa)
LOC108876160Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
tgfb2Transforming growth factor beta; Belongs to the TGF-beta family. (444 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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