45 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (339 aa)
	gtf2e1	HTH TFE/IIEalpha-type domain-containing protein. (444 aa)
	bcl2	BH4_2 domain-containing protein. (229 aa)
	casp2	Uncharacterized protein; Belongs to the peptidase C14A family. (468 aa)
	ap5z1	Uncharacterized protein. (820 aa)
	csf2rb	Uncharacterized protein. (699 aa)
	fgb	Fibrinogen C-terminal domain-containing protein. (492 aa)
	ENSLCAP00010014034	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (134 aa)
	PCK1	Uncharacterized protein. (624 aa)
	gtf2a1	Uncharacterized protein. (413 aa)
	LOC108899095	Methyltransf_25 domain-containing protein. (489 aa)
	Taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (754 aa)
	LOC108884063	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (165 aa)
	csf3r	Uncharacterized protein. (833 aa)
	LOC108898223	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (143 aa)
	c8b	MACPF domain-containing protein. (588 aa)
	ENSLCAP00010003979	Basic leucine zipper transcription factor, ATF-like. (125 aa)
	CRTC2	Uncharacterized protein. (836 aa)
	sigirr	Uncharacterized protein. (521 aa)
	ccnh	CYCLIN domain-containing protein; Belongs to the cyclin family. (324 aa)
	casp9	Uncharacterized protein; Belongs to the peptidase C14A family. (457 aa)
	ENSLCAP00010059112	Caspase 8, apoptosis-related cysteine peptidase, like 2; Belongs to the peptidase C14A family. (647 aa)
	npr3	ANF_receptor domain-containing protein. (503 aa)
	CASP3	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (259 aa)
	LOC108877193	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family. (623 aa)
	ENSLCAP00010051791	RIMS binding protein 2. (1344 aa)
	Lgmn	Legumain. (425 aa)
	CEL-2	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (352 aa)
	CEL	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (549 aa)
	C9	Complement component 9. (591 aa)
	Taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (882 aa)
	mgmt	DNA_binding_1 domain-containing protein. (240 aa)
	ENSLCAP00010044365	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (150 aa)
	ENSLCAP00010042591	Acyl-CoA synthetase short chain family member 2. (690 aa)
	LOC108884388	Uncharacterized protein. (624 aa)
	ENSLCAP00010041894	Fibrinogen gamma chain. (387 aa)
	ENSLCAP00010041794	Fibrinogen gamma chain. (479 aa)
	Trpm5	Transient receptor potential cation channel, subfamily M, member 5. (1154 aa)
	c1qbp	Uncharacterized protein. (289 aa)
	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (279 aa)
	ENSLCAP00010030561	Uncharacterized protein. (1653 aa)
	ENSLCAP00010029368	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family. (623 aa)
	ENSLCAP00010026940	Tumor necrosis factor, alpha-induced protein 3. (777 aa)
	il10	Uncharacterized protein. (187 aa)
	alpl	Alkaline phosphatase. (543 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C9	ENSLCAP00010029368	ENSLCAP00010047785	ENSLCAP00010029368	Complement component 9.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.403
C9	ENSLCAP00010030561	ENSLCAP00010047785	ENSLCAP00010030561	Complement component 9.	Uncharacterized protein.	0.497
C9	ENSLCAP00010041794	ENSLCAP00010047785	ENSLCAP00010041794	Complement component 9.	Fibrinogen gamma chain.	0.509
C9	ENSLCAP00010041894	ENSLCAP00010047785	ENSLCAP00010041894	Complement component 9.	Fibrinogen gamma chain.	0.509
C9	LOC108877193	ENSLCAP00010047785	ENSLCAP00010053944	Complement component 9.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.403
C9	c8b	ENSLCAP00010047785	ENSLCAP00010004092	Complement component 9.	MACPF domain-containing protein.	0.707
C9	fgb	ENSLCAP00010047785	ENSLCAP00010014269	Complement component 9.	Fibrinogen C-terminal domain-containing protein.	0.664
CASP3	ENSLCAP00010037861	ENSLCAP00010058548	ENSLCAP00010037861	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.902
CASP3	ENSLCAP00010059112	ENSLCAP00010058548	ENSLCAP00010059112	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Caspase 8, apoptosis-related cysteine peptidase, like 2; Belongs to the peptidase C14A family.	0.958
CASP3	bcl2	ENSLCAP00010058548	ENSLCAP00010023115	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	BH4_2 domain-containing protein.	0.546
CASP3	casp2	ENSLCAP00010058548	ENSLCAP00010021664	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.519
CASP3	casp9	ENSLCAP00010058548	ENSLCAP00010059818	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.973
CASP3	il10	ENSLCAP00010058548	ENSLCAP00010026670	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.445
ENSLCAP00010014034	LOC108884063	ENSLCAP00010014034	ENSLCAP00010007460	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.902
ENSLCAP00010014034	LOC108898223	ENSLCAP00010014034	ENSLCAP00010006270	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.903
ENSLCAP00010029368	C9	ENSLCAP00010029368	ENSLCAP00010047785	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Complement component 9.	0.403
ENSLCAP00010029368	ENSLCAP00010041794	ENSLCAP00010029368	ENSLCAP00010041794	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Fibrinogen gamma chain.	0.892
ENSLCAP00010029368	ENSLCAP00010041894	ENSLCAP00010029368	ENSLCAP00010041894	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Fibrinogen gamma chain.	0.892
ENSLCAP00010029368	LOC108877193	ENSLCAP00010029368	ENSLCAP00010053944	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.900
ENSLCAP00010029368	fgb	ENSLCAP00010029368	ENSLCAP00010014269	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Fibrinogen C-terminal domain-containing protein.	0.972