51 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010004824	Si:dkey-49n23.1; Belongs to the semaphorin family. (360 aa)
	Met	MET proto-oncogene, receptor tyrosine kinase. (1377 aa)
	sema3g	Uncharacterized protein; Belongs to the semaphorin family. (788 aa)
	PLXNA1	Plexin A1. (1886 aa)
	ENSLCAP00010005814	Uncharacterized protein; Belongs to the semaphorin family. (825 aa)
	sema3c	Uncharacterized protein; Belongs to the semaphorin family. (766 aa)
	Sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (808 aa)
	LOC108879659	Uncharacterized protein; Belongs to the semaphorin family. (864 aa)
	ENSLCAP00010009306	Sema domain-containing protein; Belongs to the semaphorin family. (894 aa)
	sema6d	Sema domain-containing protein; Belongs to the semaphorin family. (1125 aa)
	LOC108883171	Sema domain-containing protein; Belongs to the semaphorin family. (639 aa)
	LOC108883187	Sema domain-containing protein; Belongs to the semaphorin family. (1093 aa)
	Sema4d	Uncharacterized protein; Belongs to the semaphorin family. (875 aa)
	LOC108875388	Sema domain-containing protein; Belongs to the semaphorin family. (836 aa)
	ENSLCAP00010013178	Sema domain-containing protein; Belongs to the semaphorin family. (601 aa)
	Plxna4	Plexin A4. (1916 aa)
	LOC108889982	Uncharacterized protein; Belongs to the semaphorin family. (790 aa)
	LOC108889968	Uncharacterized protein. (1377 aa)
	ENSLCAP00010018042	Plexin b2a. (1845 aa)
	ENSLCAP00010019011	Plexin b2b. (1837 aa)
	PLXNA2	Plexin A2. (1898 aa)
	ENSLCAP00010020036	Si:ch211-129c21.1; Belongs to the semaphorin family. (737 aa)
	PLXND1	Plexin D1. (1801 aa)
	ENSLCAP00010020958	Plexin A1a. (1907 aa)
	LOC108882671	Sema domain-containing protein. (1979 aa)
	ENSLCAP00010023161	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (725 aa)
	sema3a	Uncharacterized protein; Belongs to the semaphorin family. (777 aa)
	sema3e	Uncharacterized protein; Belongs to the semaphorin family. (789 aa)
	sema7a	Uncharacterized protein; Belongs to the semaphorin family. (655 aa)
	ENSLCAP00010028429	Uncharacterized protein; Belongs to the semaphorin family. (874 aa)
	ENSLCAP00010028496	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (718 aa)
	ENSLCAP00010028749	Sema domain-containing protein; Belongs to the semaphorin family. (773 aa)
	LOC108881836	Sema domain-containing protein. (1078 aa)
	ENSLCAP00010036050	Plexin b1b. (2216 aa)
	ENSLCAP00010038131	Semaphorin 4e; Belongs to the semaphorin family. (756 aa)
	LOC108883616	Sema domain-containing protein; Belongs to the semaphorin family. (899 aa)
	ENSLCAP00010038332	Plexin B3. (1874 aa)
	ENSLCAP00010038454	Sema domain-containing protein. (1006 aa)
	SEMA4F	Ssemaphorin 4F; Belongs to the semaphorin family. (666 aa)
	sema4c	Uncharacterized protein; Belongs to the semaphorin family. (868 aa)
	ENSLCAP00010039910	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (750 aa)
	mst1r	Uncharacterized protein. (1374 aa)
	LOC108892896	Sema domain-containing protein. (1092 aa)
	ENSLCAP00010046752	Sema domain-containing protein; Belongs to the semaphorin family. (586 aa)
	LOC108876974	Sema domain-containing protein; Belongs to the semaphorin family. (837 aa)
	ENSLCAP00010051624	Plexin A2. (1929 aa)
	LOC108896365	Sema domain-containing protein; Belongs to the semaphorin family. (820 aa)
	sema6b	Sema domain-containing protein; Belongs to the semaphorin family. (882 aa)
	LOC108879518	Sema domain-containing protein. (1905 aa)
	ENSLCAP00010056642	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; Belongs to the semaphorin family. (435 aa)
	ENSLCAP00010058761	Sema domain-containing protein; Belongs to the semaphorin family. (501 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010004824	LOC108889968	ENSLCAP00010004824	ENSLCAP00010017828	Si:dkey-49n23.1; Belongs to the semaphorin family.	Uncharacterized protein.	0.621
ENSLCAP00010004824	Met	ENSLCAP00010004824	ENSLCAP00010004840	Si:dkey-49n23.1; Belongs to the semaphorin family.	MET proto-oncogene, receptor tyrosine kinase.	0.621
ENSLCAP00010004824	mst1r	ENSLCAP00010004824	ENSLCAP00010039979	Si:dkey-49n23.1; Belongs to the semaphorin family.	Uncharacterized protein.	0.621
ENSLCAP00010005814	ENSLCAP00010018042	ENSLCAP00010005814	ENSLCAP00010018042	Uncharacterized protein; Belongs to the semaphorin family.	Plexin b2a.	0.456
ENSLCAP00010005814	ENSLCAP00010019011	ENSLCAP00010005814	ENSLCAP00010019011	Uncharacterized protein; Belongs to the semaphorin family.	Plexin b2b.	0.456
ENSLCAP00010005814	ENSLCAP00010020958	ENSLCAP00010005814	ENSLCAP00010020958	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A1a.	0.450
ENSLCAP00010005814	ENSLCAP00010036050	ENSLCAP00010005814	ENSLCAP00010036050	Uncharacterized protein; Belongs to the semaphorin family.	Plexin b1b.	0.456
ENSLCAP00010005814	ENSLCAP00010038332	ENSLCAP00010005814	ENSLCAP00010038332	Uncharacterized protein; Belongs to the semaphorin family.	Plexin B3.	0.456
ENSLCAP00010005814	ENSLCAP00010051624	ENSLCAP00010005814	ENSLCAP00010051624	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A2.	0.450
ENSLCAP00010005814	LOC108879518	ENSLCAP00010005814	ENSLCAP00010055996	Uncharacterized protein; Belongs to the semaphorin family.	Sema domain-containing protein.	0.450
ENSLCAP00010005814	LOC108882671	ENSLCAP00010005814	ENSLCAP00010021995	Uncharacterized protein; Belongs to the semaphorin family.	Sema domain-containing protein.	0.456
ENSLCAP00010005814	LOC108889968	ENSLCAP00010005814	ENSLCAP00010017828	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.621
ENSLCAP00010005814	Met	ENSLCAP00010005814	ENSLCAP00010004840	Uncharacterized protein; Belongs to the semaphorin family.	MET proto-oncogene, receptor tyrosine kinase.	0.621
ENSLCAP00010005814	PLXNA1	ENSLCAP00010005814	ENSLCAP00010005785	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A1.	0.450
ENSLCAP00010005814	PLXNA2	ENSLCAP00010005814	ENSLCAP00010019961	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A2.	0.450
ENSLCAP00010005814	PLXND1	ENSLCAP00010005814	ENSLCAP00010020786	Uncharacterized protein; Belongs to the semaphorin family.	Plexin D1.	0.450
ENSLCAP00010005814	Plxna4	ENSLCAP00010005814	ENSLCAP00010004697	Uncharacterized protein; Belongs to the semaphorin family.	Plexin A4.	0.450
ENSLCAP00010005814	mst1r	ENSLCAP00010005814	ENSLCAP00010039979	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.621
ENSLCAP00010009306	ENSLCAP00010018042	ENSLCAP00010009306	ENSLCAP00010018042	Sema domain-containing protein; Belongs to the semaphorin family.	Plexin b2a.	0.450
ENSLCAP00010009306	ENSLCAP00010019011	ENSLCAP00010009306	ENSLCAP00010019011	Sema domain-containing protein; Belongs to the semaphorin family.	Plexin b2b.	0.450