28 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2508 aa)
	atg16l1	WD_REPEATS_REGION domain-containing protein. (644 aa)
	GABARAPL2	GABA type A receptor associated protein like 2. (135 aa)
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	LOC108883363	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (810 aa)
	ulk2	Protein kinase domain-containing protein. (1040 aa)
	gabarap	Uncharacterized protein. (122 aa)
	atg3	Autophagy-related protein 3. (318 aa)
	LOC108896745	Autophagy_act_C domain-containing protein. (243 aa)
	Pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (879 aa)
	Wipi2	WD repeat domain, phosphoinositide interacting 2. (430 aa)
	Atg12	Uncharacterized protein. (127 aa)
	LOC108887330	Uncharacterized protein. (117 aa)
	LOC108875492	Uncharacterized protein. (361 aa)
	Atg4c	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (471 aa)
	Rptor	Regulatory associated protein of MTOR, complex 1. (1362 aa)
	Atg4b	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (398 aa)
	ppp2ca	Serine/threonine-protein phosphatase. (309 aa)
	LOC108875225	Serine/threonine-protein phosphatase. (309 aa)
	atg101	Uncharacterized protein. (218 aa)
	ENSLCAP00010038893	GABA(A) receptor-associated protein like 2. (157 aa)
	atg13	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (541 aa)
	Atg2a	Autophagy related 2A. (1981 aa)
	ATG2B	Uncharacterized protein. (2076 aa)
	LOC108898650	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (435 aa)
	atg7	Uncharacterized protein. (738 aa)
	LOC108875953	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (499 aa)
	mlst8	WD_REPEATS_REGION domain-containing protein. (326 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG2B	Atg12	ENSLCAP00010043755	ENSLCAP00010021188	Uncharacterized protein.	Uncharacterized protein.	0.574
ATG2B	Atg2a	ENSLCAP00010043755	ENSLCAP00010043208	Uncharacterized protein.	Autophagy related 2A.	0.909
ATG2B	Atg4b	ENSLCAP00010043755	ENSLCAP00010022767	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.585
ATG2B	LOC108883363	ENSLCAP00010043755	ENSLCAP00010009423	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.660
ATG2B	LOC108891182	ENSLCAP00010043755	ENSLCAP00010009358	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.424
ATG2B	LOC108896745	ENSLCAP00010043755	ENSLCAP00010019037	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.414
ATG2B	Pik3c3	ENSLCAP00010043755	ENSLCAP00010020574	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.574
ATG2B	Wipi2	ENSLCAP00010043755	ENSLCAP00010020957	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 2.	0.981
ATG2B	atg101	ENSLCAP00010043755	ENSLCAP00010034186	Uncharacterized protein.	Uncharacterized protein.	0.573
ATG2B	atg13	ENSLCAP00010043755	ENSLCAP00010041989	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.557
ATG2B	atg3	ENSLCAP00010043755	ENSLCAP00010018189	Uncharacterized protein.	Autophagy-related protein 3.	0.574
ATG2B	atg7	ENSLCAP00010043755	ENSLCAP00010043910	Uncharacterized protein.	Uncharacterized protein.	0.574
ATG2B	ulk2	ENSLCAP00010043755	ENSLCAP00010011399	Uncharacterized protein.	Protein kinase domain-containing protein.	0.979
Atg12	ATG2B	ENSLCAP00010021188	ENSLCAP00010043755	Uncharacterized protein.	Uncharacterized protein.	0.574
Atg12	Atg2a	ENSLCAP00010021188	ENSLCAP00010043208	Uncharacterized protein.	Autophagy related 2A.	0.574
Atg12	Atg4b	ENSLCAP00010021188	ENSLCAP00010022767	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.713
Atg12	Atg4c	ENSLCAP00010021188	ENSLCAP00010022231	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.509
Atg12	ENSLCAP00010038893	ENSLCAP00010021188	ENSLCAP00010038893	Uncharacterized protein.	GABA(A) receptor-associated protein like 2.	0.984
Atg12	GABARAPL2	ENSLCAP00010021188	ENSLCAP00010008982	Uncharacterized protein.	GABA type A receptor associated protein like 2.	0.984
Atg12	LOC108875953	ENSLCAP00010021188	ENSLCAP00010055292	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.509