(51 nodes) Mixed, incl. Lignin catabolic process, and Stilbenoid, diarylheptanoid and gingerol biosynthesis network (Arabidopsis lyrata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7KAK4_ARALL	Uncharacterized protein. (195 aa)
	D7KDI0_ARALL	Kelch repeat-containing F-box family protein. (359 aa)
	D7KDL5_ARALL	Epimerase domain-containing protein. (342 aa)
	D7KGB1_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (581 aa)
	D7KHU7_ARALL	4-cumarate-COA-ligase. (557 aa)
	D7KJ16_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (583 aa)
	D7KJK9_ARALL	Esterase/lipase/thioesterase family protein. (329 aa)
	D7KNY0_ARALL	Transferase family protein. (433 aa)
	D7KS30_ARALL	CYP98A8; Belongs to the cytochrome P450 family. (497 aa)
	D7KS31_ARALL	CYP98A9; Belongs to the cytochrome P450 family. (491 aa)
	D7KU51_ARALL	4-coumarate--CoA ligase family protein. (528 aa)
	D7KUJ1_ARALL	Hydrolase_4 domain-containing protein. (379 aa)
	D7KVE1_ARALL	Predicted protein. (80 aa)
	D7KW82_ARALL	Uncharacterized protein. (233 aa)
	D7KW83_ARALL	Uncharacterized protein. (232 aa)
	4CL3	4-coumarate:CoA ligase 3. (567 aa)
	D7L0Q6_ARALL	Predicted protein. (539 aa)
	D7L1G0_ARALL	Oxidoreductase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (361 aa)
	D7L1Y1_ARALL	Transferase family protein. (451 aa)
	D7L3X4_ARALL	Oxidoreductase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (361 aa)
	D7L7S9_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (567 aa)
	D7L8X7_ARALL	Phenylalanine ammonia-lyase. (705 aa)
	D7LAG0_ARALL	Uncharacterized protein; Belongs to the cytochrome P450 family. (503 aa)
	D7LC57_ARALL	Cinnamate-4-hydroxylase; Belongs to the cytochrome P450 family. (505 aa)
	D7LD44_ARALL	Esterase/lipase/thioesterase family protein. (317 aa)
	D7LEL0_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (569 aa)
	D7LF33_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (581 aa)
	D7LFV5_ARALL	CYP98A3; Belongs to the cytochrome P450 family. (508 aa)
	D7LGQ0_ARALL	Esterase/lipase/thioesterase family protein. (348 aa)
	D7LJB6_ARALL	Phenylalanine ammonia-lyase. (725 aa)
	D7LKN1_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (573 aa)
	D7LTA5_ARALL	Predicted protein. (348 aa)
	PAL2	Phenylalanine ammonia-lyase. (717 aa)
	D7LWM0_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (557 aa)
	PAL3	Phenylalanine ammonia-lyase. (696 aa)
	D7LYE0_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (565 aa)
	D7LZX9_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (569 aa)
	D7M092_ARALL	Uncharacterized protein. (100 aa)
	D7M1Y8_ARALL	Uncharacterized protein. (544 aa)
	D7M3W4_ARALL	Uncharacterized protein. (183 aa)
	D7M752_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (559 aa)
	D7MFB7_ARALL	Uncharacterized protein. (238 aa)
	D7MFS3_ARALL	Uncharacterized protein. (259 aa)
	D7MGW5_ARALL	Uncharacterized protein. (566 aa)
	D7MNJ4_ARALL	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (288 aa)
	D7MNW5_ARALL	Transferase family protein. (443 aa)
	D7MP05_ARALL	Uncharacterized protein. (562 aa)
	D7MR45_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (523 aa)
	D7MTK3_ARALL	Predicted protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (381 aa)
	D7MVX1_ARALL	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (574 aa)
	D7MXZ8_ARALL	Predicted protein. (220 aa)

Your Current Organism:

Arabidopsis lyrata

NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
4CL3	D7KAK4_ARALL	D7KZ50	D7KAK4	4-coumarate:CoA ligase 3.	Uncharacterized protein.	0.897
4CL3	D7KDL5_ARALL	D7KZ50	D7KDL5	4-coumarate:CoA ligase 3.	Epimerase domain-containing protein.	0.988
4CL3	D7KGB1_ARALL	D7KZ50	D7KGB1	4-coumarate:CoA ligase 3.	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.	0.550
4CL3	D7KJK9_ARALL	D7KZ50	D7KJK9	4-coumarate:CoA ligase 3.	Esterase/lipase/thioesterase family protein.	0.899
4CL3	D7KNY0_ARALL	D7KZ50	D7KNY0	4-coumarate:CoA ligase 3.	Transferase family protein.	0.944
4CL3	D7KS30_ARALL	D7KZ50	D7KS30	4-coumarate:CoA ligase 3.	CYP98A8; Belongs to the cytochrome P450 family.	0.795
4CL3	D7KS31_ARALL	D7KZ50	D7KS31	4-coumarate:CoA ligase 3.	CYP98A9; Belongs to the cytochrome P450 family.	0.782
4CL3	D7KUJ1_ARALL	D7KZ50	D7KUJ1	4-coumarate:CoA ligase 3.	Hydrolase_4 domain-containing protein.	0.878
4CL3	D7KVE1_ARALL	D7KZ50	D7KVE1	4-coumarate:CoA ligase 3.	Predicted protein.	0.650
4CL3	D7KW82_ARALL	D7KZ50	D7KW82	4-coumarate:CoA ligase 3.	Uncharacterized protein.	0.906
4CL3	D7KW83_ARALL	D7KZ50	D7KW83	4-coumarate:CoA ligase 3.	Uncharacterized protein.	0.897
4CL3	D7L1G0_ARALL	D7KZ50	D7L1G0	4-coumarate:CoA ligase 3.	Oxidoreductase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.924
4CL3	D7L1Y1_ARALL	D7KZ50	D7L1Y1	4-coumarate:CoA ligase 3.	Transferase family protein.	0.911
4CL3	D7L3X4_ARALL	D7KZ50	D7L3X4	4-coumarate:CoA ligase 3.	Oxidoreductase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.924
4CL3	D7L7S9_ARALL	D7KZ50	D7L7S9	4-coumarate:CoA ligase 3.	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.	0.551
4CL3	D7L8X7_ARALL	D7KZ50	D7L8X7	4-coumarate:CoA ligase 3.	Phenylalanine ammonia-lyase.	0.968
4CL3	D7LAG0_ARALL	D7KZ50	D7LAG0	4-coumarate:CoA ligase 3.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.748
4CL3	D7LC57_ARALL	D7KZ50	D7LC57	4-coumarate:CoA ligase 3.	Cinnamate-4-hydroxylase; Belongs to the cytochrome P450 family.	0.991
4CL3	D7LD44_ARALL	D7KZ50	D7LD44	4-coumarate:CoA ligase 3.	Esterase/lipase/thioesterase family protein.	0.877
4CL3	D7LEL0_ARALL	D7KZ50	D7LEL0	4-coumarate:CoA ligase 3.	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.	0.519

page 1 of 95

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About