22 items (Arabidopsis lyrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

Your Input:
	D7L5R7_ARALL	Uncharacterized protein. (151 aa)
	D7MM06_ARALL	Small nuclear ribonucleoprotein-associated protein. (256 aa)
	D7MFN3_ARALL	MPN domain-containing protein. (2332 aa)
	D7MFJ0_ARALL	Small nuclear ribonucleoprotein-associated protein. (258 aa)
	D7MC60_ARALL	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	D7MAI5_ARALL	Predicted protein. (2149 aa)
	D7M3C5_ARALL	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (116 aa)
	D7M232_ARALL	OCRE domain-containing protein. (351 aa)
	D7M1A3_ARALL	Uncharacterized protein. (142 aa)
	D7LTA3_ARALL	Small nuclear ribonucleoprotein Sm D2. (109 aa)
	D7LGQ1_ARALL	Small nuclear ribonucleoprotein Sm D2. (105 aa)
	D7LG40_ARALL	Small nuclear ribonucleoprotein G. (80 aa)
	D7LAN7_ARALL	Small nuclear ribonucleoprotein G. (79 aa)
	D7L6M5_ARALL	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (102 aa)
	D7L2U7_ARALL	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	D7KZ93_ARALL	Predicted protein. (93 aa)
	D7KX96_ARALL	MPN domain-containing protein. (2381 aa)
	D7KTC1_ARALL	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (129 aa)
	D7KJ32_ARALL	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (142 aa)
	D7KGH1_ARALL	Splicing factor Prp18 family protein. (257 aa)
	D7KCC8_ARALL	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (117 aa)
	D7KCB8_ARALL	Splicing factor Prp18 family protein. (417 aa)

Your Current Organism:

Arabidopsis lyrata

NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7KCB8_ARALL	D7KCC8_ARALL	D7KCB8	D7KCC8	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.550
D7KCB8_ARALL	D7KGH1_ARALL	D7KCB8	D7KGH1	Splicing factor Prp18 family protein.	Splicing factor Prp18 family protein.	0.901
D7KCB8_ARALL	D7KJ32_ARALL	D7KCB8	D7KJ32	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.497
D7KCB8_ARALL	D7KTC1_ARALL	D7KCB8	D7KTC1	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.497
D7KCB8_ARALL	D7KX96_ARALL	D7KCB8	D7KX96	Splicing factor Prp18 family protein.	MPN domain-containing protein.	0.921
D7KCB8_ARALL	D7L2U7_ARALL	D7KCB8	D7L2U7	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.680
D7KCB8_ARALL	D7L6M5_ARALL	D7KCB8	D7L6M5	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.550
D7KCB8_ARALL	D7LAN7_ARALL	D7KCB8	D7LAN7	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein G.	0.533
D7KCB8_ARALL	D7LG40_ARALL	D7KCB8	D7LG40	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein G.	0.533
D7KCB8_ARALL	D7LGQ1_ARALL	D7KCB8	D7LGQ1	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein Sm D2.	0.605
D7KCB8_ARALL	D7LTA3_ARALL	D7KCB8	D7LTA3	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein Sm D2.	0.605
D7KCB8_ARALL	D7M3C5_ARALL	D7KCB8	D7M3C5	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.550
D7KCB8_ARALL	D7MAI5_ARALL	D7KCB8	D7MAI5	Splicing factor Prp18 family protein.	Predicted protein.	0.921
D7KCB8_ARALL	D7MC60_ARALL	D7KCB8	D7MC60	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.680
D7KCB8_ARALL	D7MFJ0_ARALL	D7KCB8	D7MFJ0	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein-associated protein.	0.522
D7KCB8_ARALL	D7MFN3_ARALL	D7KCB8	D7MFN3	Splicing factor Prp18 family protein.	MPN domain-containing protein.	0.804
D7KCB8_ARALL	D7MM06_ARALL	D7KCB8	D7MM06	Splicing factor Prp18 family protein.	Small nuclear ribonucleoprotein-associated protein.	0.522
D7KCC8_ARALL	D7KCB8_ARALL	D7KCC8	D7KCB8	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Splicing factor Prp18 family protein.	0.550
D7KCC8_ARALL	D7KGH1_ARALL	D7KCC8	D7KGH1	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Splicing factor Prp18 family protein.	0.550
D7KCC8_ARALL	D7KJ32_ARALL	D7KCC8	D7KJ32	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.982

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