(14 nodes) UDP-L-arabinose metabolic process network (Arabidopsis lyrata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7MFI8_ARALL	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (391 aa)
	D7KFM3_ARALL	NAD(P)-bd_dom domain-containing protein. (418 aa)
	D7KPA9_ARALL	Uncharacterized protein. (266 aa)
	UGE1	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (351 aa)
	UGE3	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (351 aa)
	D7L7N9_ARALL	Uncharacterized protein. (374 aa)
	D7LAM1_ARALL	Uncharacterized protein. (357 aa)
	D7LHP8_ARALL	Predicted protein. (417 aa)
	RGP2	Reversibly glycosylated polypeptide-3. (360 aa)
	D7MW37_ARALL	Uncharacterized protein. (366 aa)
	D7MS64_ARALL	Uncharacterized protein. (614 aa)
	D7MQA6_ARALL	Uncharacterized protein. (359 aa)
	D7MM15_ARALL	Predicted protein. (412 aa)
	D7M855_ARALL	Uncharacterized protein. (348 aa)

Your Current Organism:

Arabidopsis lyrata

NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7KFM3_ARALL	D7L7N9_ARALL	D7KFM3	D7L7N9	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.650
D7KFM3_ARALL	D7LAM1_ARALL	D7KFM3	D7LAM1	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.894
D7KFM3_ARALL	D7M855_ARALL	D7KFM3	D7M855	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.650
D7KFM3_ARALL	D7MQA6_ARALL	D7KFM3	D7MQA6	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.650
D7KFM3_ARALL	D7MS64_ARALL	D7KFM3	D7MS64	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.981
D7KFM3_ARALL	RGP2	D7KFM3	D7M7E9	NAD(P)-bd_dom domain-containing protein.	Reversibly glycosylated polypeptide-3.	0.817
D7KPA9_ARALL	D7MS64_ARALL	D7KPA9	D7MS64	Uncharacterized protein.	Uncharacterized protein.	0.673
D7L7N9_ARALL	D7KFM3_ARALL	D7L7N9	D7KFM3	Uncharacterized protein.	NAD(P)-bd_dom domain-containing protein.	0.650
D7L7N9_ARALL	D7LHP8_ARALL	D7L7N9	D7LHP8	Uncharacterized protein.	Predicted protein.	0.650
D7L7N9_ARALL	D7MFI8_ARALL	D7L7N9	D7MFI8	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.650
D7L7N9_ARALL	D7MM15_ARALL	D7L7N9	D7MM15	Uncharacterized protein.	Predicted protein.	0.650
D7L7N9_ARALL	D7MS64_ARALL	D7L7N9	D7MS64	Uncharacterized protein.	Uncharacterized protein.	0.902
D7LAM1_ARALL	D7KFM3_ARALL	D7LAM1	D7KFM3	Uncharacterized protein.	NAD(P)-bd_dom domain-containing protein.	0.894
D7LAM1_ARALL	D7LHP8_ARALL	D7LAM1	D7LHP8	Uncharacterized protein.	Predicted protein.	0.686
D7LAM1_ARALL	D7MFI8_ARALL	D7LAM1	D7MFI8	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.699
D7LAM1_ARALL	D7MM15_ARALL	D7LAM1	D7MM15	Uncharacterized protein.	Predicted protein.	0.693
D7LAM1_ARALL	D7MS64_ARALL	D7LAM1	D7MS64	Uncharacterized protein.	Uncharacterized protein.	0.918
D7LAM1_ARALL	RGP2	D7LAM1	D7M7E9	Uncharacterized protein.	Reversibly glycosylated polypeptide-3.	0.670
D7LHP8_ARALL	D7L7N9_ARALL	D7LHP8	D7L7N9	Predicted protein.	Uncharacterized protein.	0.650
D7LHP8_ARALL	D7LAM1_ARALL	D7LHP8	D7LAM1	Predicted protein.	Uncharacterized protein.	0.686

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About