STRINGSTRING
D7KX96_ARALL D7KX96_ARALL D7KBM8_ARALL D7KBM8_ARALL D7KCB8_ARALL D7KCB8_ARALL D7KCC8_ARALL D7KCC8_ARALL D7KCE0_ARALL D7KCE0_ARALL D7LAN7_ARALL D7LAN7_ARALL D7LA89_ARALL D7LA89_ARALL D7LA20_ARALL D7LA20_ARALL D7L994_ARALL D7L994_ARALL D7L6M5_ARALL D7L6M5_ARALL D7L5R7_ARALL D7L5R7_ARALL D7L4Q9_ARALL D7L4Q9_ARALL D7L4M9_ARALL D7L4M9_ARALL D7L4B1_ARALL D7L4B1_ARALL D7L3A5_ARALL D7L3A5_ARALL D7L365_ARALL D7L365_ARALL D7L2U7_ARALL D7L2U7_ARALL D7L2R9_ARALL D7L2R9_ARALL D7KGZ5_ARALL D7KGZ5_ARALL D7KJ32_ARALL D7KJ32_ARALL LSM3 LSM3 D7KK48_ARALL D7KK48_ARALL D7KK49_ARALL D7KK49_ARALL D7KPQ6_ARALL D7KPQ6_ARALL D7KQU2_ARALL D7KQU2_ARALL D7KSG5_ARALL D7KSG5_ARALL D7KTC1_ARALL D7KTC1_ARALL LSM3-2 LSM3-2 D7KXB6_ARALL D7KXB6_ARALL D7KY18_ARALL D7KY18_ARALL D7L2Q2_ARALL D7L2Q2_ARALL D7L1S4_ARALL D7L1S4_ARALL D7L1N2_ARALL D7L1N2_ARALL D7L0F9_ARALL D7L0F9_ARALL D7KZM7_ARALL D7KZM7_ARALL D7KZ93_ARALL D7KZ93_ARALL D7KCS2_ARALL D7KCS2_ARALL D7KDB1_ARALL D7KDB1_ARALL D7KG09_ARALL D7KG09_ARALL D7KGA2_ARALL D7KGA2_ARALL D7KGH1_ARALL D7KGH1_ARALL D7KGX2_ARALL D7KGX2_ARALL D7LBL8_ARALL D7LBL8_ARALL D7LF03_ARALL D7LF03_ARALL D7LX06_ARALL D7LX06_ARALL D7LWH3_ARALL D7LWH3_ARALL D7LVA2_ARALL D7LVA2_ARALL D7LV21_ARALL D7LV21_ARALL D7LV19_ARALL D7LV19_ARALL D7LTH2_ARALL D7LTH2_ARALL D7LTA3_ARALL D7LTA3_ARALL D7LS50_ARALL D7LS50_ARALL D7LQM2_ARALL D7LQM2_ARALL D7LPI4_ARALL D7LPI4_ARALL D7LNA8_ARALL D7LNA8_ARALL D7LLF3_ARALL D7LLF3_ARALL D7LKU5_ARALL D7LKU5_ARALL D7LKI9_ARALL D7LKI9_ARALL D7LK05_ARALL D7LK05_ARALL D7LH79_ARALL D7LH79_ARALL D7LGQ1_ARALL D7LGQ1_ARALL D7LGP5_ARALL D7LGP5_ARALL D7LG40_ARALL D7LG40_ARALL D7LYZ8_ARALL D7LYZ8_ARALL D7LZ71_ARALL D7LZ71_ARALL D7LZR2_ARALL D7LZR2_ARALL D7LZR3_ARALL D7LZR3_ARALL D7LZV1_ARALL D7LZV1_ARALL D7LZV3_ARALL D7LZV3_ARALL D7LZY5_ARALL D7LZY5_ARALL D7M134_ARALL D7M134_ARALL D7M145_ARALL D7M145_ARALL D7M1A3_ARALL D7M1A3_ARALL D7M1W5_ARALL D7M1W5_ARALL D7M232_ARALL D7M232_ARALL D7M2N7_ARALL D7M2N7_ARALL D7M2Y9_ARALL D7M2Y9_ARALL D7M3A0_ARALL D7M3A0_ARALL D7M3C5_ARALL D7M3C5_ARALL D7M4G9_ARALL D7M4G9_ARALL D7M4H0_ARALL D7M4H0_ARALL D7M544_ARALL D7M544_ARALL LSM4 LSM4 D7M755_ARALL D7M755_ARALL D7M829_ARALL D7M829_ARALL D7M881_ARALL D7M881_ARALL D7MAF9_ARALL D7MAF9_ARALL D7MAG0_ARALL D7MAG0_ARALL D7MAG1_ARALL D7MAG1_ARALL D7MAI5_ARALL D7MAI5_ARALL D7MC60_ARALL D7MC60_ARALL D7ME47_ARALL D7ME47_ARALL D7ME56_ARALL D7ME56_ARALL D7MER2_ARALL D7MER2_ARALL D7MF68_ARALL D7MF68_ARALL D7MF69_ARALL D7MF69_ARALL D7MFJ0_ARALL D7MFJ0_ARALL D7MFL5_ARALL D7MFL5_ARALL D7MFN3_ARALL D7MFN3_ARALL D7MH32_ARALL D7MH32_ARALL D7MM06_ARALL D7MM06_ARALL LSM5 LSM5 D7MN74_ARALL D7MN74_ARALL D7MQH7_ARALL D7MQH7_ARALL D7MR05_ARALL D7MR05_ARALL D7MR97_ARALL D7MR97_ARALL D7MRX2_ARALL D7MRX2_ARALL D7MX62_ARALL D7MX62_ARALL D7MXW1_ARALL D7MXW1_ARALL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
D7KX96_ARALLMPN domain-containing protein. (2381 aa)
D7KBM8_ARALLPredicted protein. (778 aa)
D7KCB8_ARALLSplicing factor Prp18 family protein. (417 aa)
D7KCC8_ARALLSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (117 aa)
D7KCE0_ARALLSm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
D7LAN7_ARALLSmall nuclear ribonucleoprotein G. (79 aa)
D7LA89_ARALLNop domain-containing protein. (444 aa)
D7LA20_ARALLFF domain-containing protein. (960 aa)
D7L994_ARALLWD_REPEATS_REGION domain-containing protein. (338 aa)
D7L6M5_ARALLSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (102 aa)
D7L5R7_ARALLUncharacterized protein. (151 aa)
D7L4Q9_ARALLPredicted protein. (128 aa)
D7L4M9_ARALLU1-type domain-containing protein. (202 aa)
D7L4B1_ARALLPredicted protein. (134 aa)
D7L3A5_ARALLSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
D7L365_ARALLUncharacterized protein. (197 aa)
D7L2U7_ARALLSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
D7L2R9_ARALLRRM domain-containing protein. (125 aa)
D7KGZ5_ARALLUncharacterized protein. (154 aa)
D7KJ32_ARALLSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (142 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
D7KK48_ARALLSwap (Suppressor-of-White-APricot)/surp domain-containing protein. (778 aa)
D7KK49_ARALLUbiquitin-like domain-containing protein. (128 aa)
D7KPQ6_ARALLUncharacterized protein. (967 aa)
D7KQU2_ARALLUncharacterized protein. (302 aa)
D7KSG5_ARALLSm domain-containing protein. (590 aa)
D7KTC1_ARALLSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (129 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
D7KXB6_ARALLEMB1220. (480 aa)
D7KY18_ARALLNOSIC domain-containing protein. (169 aa)
D7L2Q2_ARALLPredicted protein. (146 aa)
D7L1S4_ARALLSm domain-containing protein. (88 aa)
D7L1N2_ARALLUncharacterized protein. (772 aa)
D7L0F9_ARALLUncharacterized protein. (402 aa)
D7KZM7_ARALLPredicted protein. (1384 aa)
D7KZ93_ARALLPredicted protein. (93 aa)
D7KCS2_ARALLUncharacterized protein. (790 aa)
D7KDB1_ARALLUncharacterized protein. (1328 aa)
D7KG09_ARALLTr-type G domain-containing protein. (987 aa)
D7KGA2_ARALLSURP motif domain-containing protein. (357 aa)
D7KGH1_ARALLSplicing factor Prp18 family protein. (257 aa)
D7KGX2_ARALLUncharacterized protein. (243 aa)
D7LBL8_ARALLUncharacterized protein. (232 aa)
D7LF03_ARALLHydroxyproline-rich glycoprotein family protein. (276 aa)
D7LX06_ARALLUncharacterized protein. (404 aa)
D7LWH3_ARALLSm domain-containing protein. (91 aa)
D7LVA2_ARALLUncharacterized protein. (198 aa)
D7LV21_ARALLCPSF_A domain-containing protein. (454 aa)
D7LV19_ARALLPredicted protein. (633 aa)
D7LTH2_ARALLRRM domain-containing protein. (430 aa)
D7LTA3_ARALLSmall nuclear ribonucleoprotein Sm D2. (109 aa)
D7LS50_ARALLUncharacterized protein. (967 aa)
D7LQM2_ARALLSm domain-containing protein. (99 aa)
D7LPI4_ARALLUncharacterized protein. (443 aa)
D7LNA8_ARALLUncharacterized protein. (316 aa)
D7LLF3_ARALLUncharacterized protein. (110 aa)
D7LKU5_ARALLUncharacterized protein. (379 aa)
D7LKI9_ARALLSm domain-containing protein. (91 aa)
D7LK05_ARALLRRM domain-containing protein. (333 aa)
D7LH79_ARALLWD_REPEATS_REGION domain-containing protein. (552 aa)
D7LGQ1_ARALLSmall nuclear ribonucleoprotein Sm D2. (105 aa)
D7LGP5_ARALLUncharacterized protein. (249 aa)
D7LG40_ARALLSmall nuclear ribonucleoprotein G. (80 aa)
D7LYZ8_ARALLSURP motif domain-containing protein. (190 aa)
D7LZ71_ARALLUncharacterized protein. (426 aa)
D7LZR2_ARALLUncharacterized protein. (562 aa)
D7LZR3_ARALLUbiquitin-like domain-containing protein. (261 aa)
D7LZV1_ARALLUncharacterized protein. (53 aa)
D7LZV3_ARALLUncharacterized protein. (65 aa)
D7LZY5_ARALLRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
D7M134_ARALLRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
D7M145_ARALLPredicted protein. (444 aa)
D7M1A3_ARALLUncharacterized protein. (142 aa)
D7M1W5_ARALLPredicted protein. (212 aa)
D7M232_ARALLOCRE domain-containing protein. (351 aa)
D7M2N7_ARALLUncharacterized protein. (1004 aa)
D7M2Y9_ARALLUncharacterized protein. (231 aa)
D7M3A0_ARALLU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (194 aa)
D7M3C5_ARALLSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (116 aa)
D7M4G9_ARALLRNA recognition motif-containing protein. (124 aa)
D7M4H0_ARALLUncharacterized protein. (1141 aa)
D7M544_ARALLUncharacterized protein. (248 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
D7M755_ARALLPredicted protein. (446 aa)
D7M829_ARALLRNA recognition motif-containing protein. (519 aa)
D7M881_ARALLUncharacterized protein. (812 aa)
D7MAF9_ARALLUncharacterized protein. (285 aa)
D7MAG0_ARALLUncharacterized protein. (406 aa)
D7MAG1_ARALLUncharacterized protein. (516 aa)
D7MAI5_ARALLPredicted protein. (2149 aa)
D7MC60_ARALLSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
D7ME47_ARALLRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
D7ME56_ARALLUbiquitin thiolesterase. (445 aa)
D7MER2_ARALLPSP domain-containing protein. (584 aa)
D7MF68_ARALLPredicted protein. (487 aa)
D7MF69_ARALLUbiquitin-like domain-containing protein. (76 aa)
D7MFJ0_ARALLSmall nuclear ribonucleoprotein-associated protein. (258 aa)
D7MFL5_ARALLPRP1_N domain-containing protein. (805 aa)
D7MFN3_ARALLMPN domain-containing protein. (2332 aa)
D7MH32_ARALLSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
D7MM06_ARALLSmall nuclear ribonucleoprotein-associated protein. (256 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
D7MN74_ARALLNop domain-containing protein. (455 aa)
D7MQH7_ARALLUncharacterized protein. (173 aa)
D7MR05_ARALLUncharacterized protein. (334 aa)
D7MR97_ARALLTOG domain-containing protein. (1264 aa)
D7MRX2_ARALLBinding protein. (1035 aa)
D7MX62_ARALLPredicted protein. (93 aa)
D7MXW1_ARALLUncharacterized protein. (565 aa)
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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