STRINGSTRING
D7M1A3_ARALL D7M1A3_ARALL D7M232_ARALL D7M232_ARALL D7KJ32_ARALL D7KJ32_ARALL D7LGQ1_ARALL D7LGQ1_ARALL D7LG40_ARALL D7LG40_ARALL D7KCB8_ARALL D7KCB8_ARALL D7MFN3_ARALL D7MFN3_ARALL D7MAI5_ARALL D7MAI5_ARALL D7KTC1_ARALL D7KTC1_ARALL D7KX96_ARALL D7KX96_ARALL D7L5R7_ARALL D7L5R7_ARALL D7L6M5_ARALL D7L6M5_ARALL D7KGH1_ARALL D7KGH1_ARALL D7LTA3_ARALL D7LTA3_ARALL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
D7M1A3_ARALLUncharacterized protein. (142 aa)
D7M232_ARALLOCRE domain-containing protein. (351 aa)
D7KJ32_ARALLSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (142 aa)
D7LGQ1_ARALLSmall nuclear ribonucleoprotein Sm D2. (105 aa)
D7LG40_ARALLSmall nuclear ribonucleoprotein G. (80 aa)
D7KCB8_ARALLSplicing factor Prp18 family protein. (417 aa)
D7MFN3_ARALLMPN domain-containing protein. (2332 aa)
D7MAI5_ARALLPredicted protein. (2149 aa)
D7KTC1_ARALLSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (129 aa)
D7KX96_ARALLMPN domain-containing protein. (2381 aa)
D7L5R7_ARALLUncharacterized protein. (151 aa)
D7L6M5_ARALLSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (102 aa)
D7KGH1_ARALLSplicing factor Prp18 family protein. (257 aa)
D7LTA3_ARALLSmall nuclear ribonucleoprotein Sm D2. (109 aa)
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata
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