42 items (Arabidopsis lyrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7L5F8_ARALL	Ribosomal protein L33 family protein. (58 aa)
	D7L296_ARALL	Structural constituent of ribosome. (147 aa)
	D7L1N0_ARALL	Ribosomal_S10 domain-containing protein. (240 aa)
	D7L176_ARALL	Uncharacterized protein. (219 aa)
	D7KUM3_ARALL	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (154 aa)
	D7KRR7_ARALL	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (122 aa)
	D7KRM2_ARALL	Predicted protein. (192 aa)
	rpl14	50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA. (122 aa)
	D7KNB9_ARALL	Uncharacterized protein. (84 aa)
	D7KBM6_ARALL	Uncharacterized protein. (233 aa)
	rpl16	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (135 aa)
	D7KC72_ARALL	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (122 aa)
	D7KEJ7_ARALL	Uncharacterized protein. (480 aa)
	D7KFG9_ARALL	Predicted protein; Belongs to the universal ribosomal protein uL14 family. (183 aa)
	Rps19	Predicted protein; Belongs to the universal ribosomal protein uS19 family. (49 aa)
	D7KGM9_ARALL	Uncharacterized protein. (313 aa)
	D7KH00_ARALL	30S ribosomal protein S18 family; Belongs to the bacterial ribosomal protein bS18 family. (261 aa)
	D7KHW1_ARALL	Ribosomal protein L29 family protein. (143 aa)
	D7KJY7_ARALL	Uncharacterized protein. (84 aa)
	D7MY88_ARALL	Uncharacterized protein. (79 aa)
	D7MWA6_ARALL	Uncharacterized protein. (60 aa)
	D7MRW2_ARALL	Ribosomal protein L17 family protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
	D7MQF3_ARALL	Predicted protein. (112 aa)
	D7MN91_ARALL	Uncharacterized protein. (85 aa)
	D7MLH9_ARALL	Uncharacterized protein. (102 aa)
	D7MJK2_ARALL	Uncharacterized protein. (127 aa)
	D7MFE8_ARALL	Uncharacterized protein. (246 aa)
	D7MCW3_ARALL	Predicted protein. (60 aa)
	D7MB63_ARALL	Ribosomal protein L28 family protein. (212 aa)
	D7M967_ARALL	Uncharacterized protein. (174 aa)
	D7M7P0_ARALL	Ribosomal protein S7. (148 aa)
	D7M623_ARALL	Uncharacterized protein. (132 aa)
	D7M2J1_ARALL	Uncharacterized protein. (252 aa)
	D7M271_ARALL	Ribosomal protein L17 family protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
	D7LWF9_ARALL	Mitochondrial ribosomal protein L51/S25/CI-B8 family protein. (119 aa)
	D7LWF5_ARALL	L51_S25_CI-B8 domain-containing protein. (76 aa)
	D7LS38_ARALL	Ribosomal protein S9 family protein; Belongs to the universal ribosomal protein uS9 family. (430 aa)
	D7LNR4_ARALL	Uncharacterized protein. (312 aa)
	D7L9L7_ARALL	Uncharacterized protein. (125 aa)
	D7L9L3_ARALL	Ribosomal protein L13 family protein. (205 aa)
	D7L947_ARALL	Ribosomal protein S6 family protein. (139 aa)
	D7L7I8_ARALL	Predicted protein. (107 aa)

Your Current Organism:

Arabidopsis lyrata

NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7KBM6_ARALL	D7KC72_ARALL	D7KBM6	D7KC72	Uncharacterized protein.	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family.	0.774
D7KBM6_ARALL	D7KEJ7_ARALL	D7KBM6	D7KEJ7	Uncharacterized protein.	Uncharacterized protein.	0.926
D7KBM6_ARALL	D7KFG9_ARALL	D7KBM6	D7KFG9	Uncharacterized protein.	Predicted protein; Belongs to the universal ribosomal protein uL14 family.	0.869
D7KBM6_ARALL	D7KGM9_ARALL	D7KBM6	D7KGM9	Uncharacterized protein.	Uncharacterized protein.	0.852
D7KBM6_ARALL	D7KH00_ARALL	D7KBM6	D7KH00	Uncharacterized protein.	30S ribosomal protein S18 family; Belongs to the bacterial ribosomal protein bS18 family.	0.928
D7KBM6_ARALL	D7KHW1_ARALL	D7KBM6	D7KHW1	Uncharacterized protein.	Ribosomal protein L29 family protein.	0.945
D7KBM6_ARALL	D7KJY7_ARALL	D7KBM6	D7KJY7	Uncharacterized protein.	Uncharacterized protein.	0.856
D7KBM6_ARALL	D7KNB9_ARALL	D7KBM6	D7KNB9	Uncharacterized protein.	Uncharacterized protein.	0.856
D7KBM6_ARALL	D7KRM2_ARALL	D7KBM6	D7KRM2	Uncharacterized protein.	Predicted protein.	0.930
D7KBM6_ARALL	D7KRR7_ARALL	D7KBM6	D7KRR7	Uncharacterized protein.	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family.	0.774
D7KBM6_ARALL	D7KUM3_ARALL	D7KBM6	D7KUM3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.878
D7KBM6_ARALL	D7L176_ARALL	D7KBM6	D7L176	Uncharacterized protein.	Uncharacterized protein.	0.926
D7KBM6_ARALL	D7L1N0_ARALL	D7KBM6	D7L1N0	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.864
D7KBM6_ARALL	D7L296_ARALL	D7KBM6	D7L296	Uncharacterized protein.	Structural constituent of ribosome.	0.936
D7KBM6_ARALL	D7L5F8_ARALL	D7KBM6	D7L5F8	Uncharacterized protein.	Ribosomal protein L33 family protein.	0.922
D7KBM6_ARALL	D7L7I8_ARALL	D7KBM6	D7L7I8	Uncharacterized protein.	Predicted protein.	0.856
D7KBM6_ARALL	D7L947_ARALL	D7KBM6	D7L947	Uncharacterized protein.	Ribosomal protein S6 family protein.	0.926
D7KBM6_ARALL	D7L9L3_ARALL	D7KBM6	D7L9L3	Uncharacterized protein.	Ribosomal protein L13 family protein.	0.928
D7KBM6_ARALL	D7L9L7_ARALL	D7KBM6	D7L9L7	Uncharacterized protein.	Uncharacterized protein.	0.948
D7KBM6_ARALL	D7LNR4_ARALL	D7KBM6	D7LNR4	Uncharacterized protein.	Uncharacterized protein.	0.852

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