(73 nodes) Small auxin-up RNA network (Arabidopsis lyrata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7MT01_ARALL	Auxin-responsive family protein. (141 aa)
	D7LIF6_ARALL	Uncharacterized protein. (109 aa)
	D7LI67_ARALL	Uncharacterized protein. (175 aa)
	D7LF78_ARALL	Auxin-responsive family protein. (121 aa)
	D7LCG7_ARALL	Uncharacterized protein. (162 aa)
	D7LAX3_ARALL	Uncharacterized protein. (118 aa)
	D7LAD8_ARALL	Auxin-responsive family protein. (112 aa)
	D7L8D5_ARALL	Auxin-responsive family protein. (113 aa)
	D7L7L5_ARALL	Auxin-responsive family protein. (107 aa)
	D7L1A8_ARALL	Uncharacterized protein. (95 aa)
	D7L1A7_ARALL	Uncharacterized protein. (67 aa)
	D7L1A4_ARALL	Uncharacterized protein. (96 aa)
	D7L0K8_ARALL	Auxin-responsive family protein. (132 aa)
	D7KZD2_ARALL	Uncharacterized protein. (119 aa)
	D7KVY6_ARALL	Auxin-responsive family protein. (132 aa)
	D7KTA8_ARALL	Auxin-responsive family protein. (122 aa)
	D7KSR0_ARALL	Auxin-responsive family protein. (154 aa)
	D7KSQ9_ARALL	Uncharacterized protein. (108 aa)
	D7KNW5_ARALL	Auxin-responsive family protein. (115 aa)
	D7KMW0_ARALL	Uncharacterized protein. (103 aa)
	D7KJ22_ARALL	Auxin-responsive family protein. (147 aa)
	D7KI64_ARALL	Auxin-responsive family protein. (153 aa)
	D7KI61_ARALL	Uncharacterized protein. (117 aa)
	D7KGT9_ARALL	Uncharacterized protein. (132 aa)
	D7KGT8_ARALL	Uncharacterized protein. (68 aa)
	D7KFE5_ARALL	Uncharacterized protein. (130 aa)
	D7KEG2_ARALL	Auxin-responsive family protein. (147 aa)
	D7KDU7_ARALL	Uncharacterized protein. (82 aa)
	D7KDT6_ARALL	Uncharacterized protein. (97 aa)
	D7KDT7_ARALL	Auxin-responsive family protein. (101 aa)
	D7KDT8_ARALL	Auxin-responsive family protein. (145 aa)
	D7KDT9_ARALL	Uncharacterized protein. (128 aa)
	D7KDU0_ARALL	Uncharacterized protein. (131 aa)
	D7KDU4_ARALL	Predicted protein. (190 aa)
	D7LIP6_ARALL	Uncharacterized protein. (134 aa)
	D7LJB4_ARALL	Auxin-responsive family protein. (124 aa)
	D7LL11_ARALL	Uncharacterized protein. (85 aa)
	D7LL13_ARALL	Uncharacterized protein. (98 aa)
	D7LL14_ARALL	Uncharacterized protein. (104 aa)
	D7LPF6_ARALL	Uncharacterized protein. (160 aa)
	D7LRT5_ARALL	Auxin-responsive family protein. (168 aa)
	D7LSQ6_ARALL	Auxin-responsive family protein. (139 aa)
	D7LUG3_ARALL	Auxin-responsive family protein. (129 aa)
	D7LWM6_ARALL	Auxin-responsive family protein. (110 aa)
	D7LXA3_ARALL	Uncharacterized protein. (98 aa)
	D7LXQ6_ARALL	Uncharacterized protein. (90 aa)
	D7LXQ7_ARALL	Uncharacterized protein. (90 aa)
	D7LXR0_ARALL	Uncharacterized protein. (90 aa)
	D7LXR3_ARALL	Uncharacterized protein. (90 aa)
	D7M047_ARALL	Uncharacterized protein. (165 aa)
	D7M048_ARALL	Uncharacterized protein. (122 aa)
	D7M112_ARALL	Auxin-responsive family protein. (160 aa)
	D7M2L4_ARALL	Predicted protein. (78 aa)
	D7M3K6_ARALL	Auxin-responsive family protein. (148 aa)
	D7M515_ARALL	Auxin-responsive family protein. (122 aa)
	D7MB78_ARALL	Uncharacterized protein. (189 aa)
	D7MBP5_ARALL	Uncharacterized protein. (104 aa)
	D7MDI5_ARALL	Auxin-responsive family protein. (105 aa)
	D7MDI6_ARALL	Auxin-responsive family protein. (94 aa)
	D7MDI7_ARALL	Auxin-responsive family protein. (106 aa)
	D7MDI8_ARALL	Auxin-responsive family protein. (106 aa)
	D7MDI9_ARALL	Auxin-responsive family protein. (104 aa)
	D7MDJ0_ARALL	Auxin-responsive family protein. (107 aa)
	D7MDJ1_ARALL	Uncharacterized protein. (147 aa)
	D7ME23_ARALL	Auxin-responsive family protein. (148 aa)
	D7MFN8_ARALL	Uncharacterized protein. (89 aa)
	D7MFP0_ARALL	Uncharacterized protein. (98 aa)
	D7MFP1_ARALL	SAUR_AC1. (89 aa)
	D7MFP2_ARALL	Uncharacterized protein. (105 aa)
	D7MHB3_ARALL	Uncharacterized protein. (92 aa)
	D7MMZ5_ARALL	Predicted protein. (99 aa)
	D7MQA8_ARALL	Auxin-responsive family protein. (180 aa)
	D7MST9_ARALL	Auxin-responsive family protein. (111 aa)

Your Current Organism:

Arabidopsis lyrata

NCBI taxonomy Id: 81972
Other names: A. lyrata subsp. lyrata, Arabidopsis lyrata subsp. lyrata, Arabis lyrata, Arabis lyrata subsp. lyrata, Cardaminopsis lyrata

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7KDT7_ARALL	D7KEG2_ARALL	D7KDT7	D7KEG2	Auxin-responsive family protein.	Auxin-responsive family protein.	0.467
D7KDT7_ARALL	D7LCG7_ARALL	D7KDT7	D7LCG7	Auxin-responsive family protein.	Uncharacterized protein.	0.412
D7KDT7_ARALL	D7M048_ARALL	D7KDT7	D7M048	Auxin-responsive family protein.	Uncharacterized protein.	0.459
D7KDT7_ARALL	D7M112_ARALL	D7KDT7	D7M112	Auxin-responsive family protein.	Auxin-responsive family protein.	0.513
D7KDT7_ARALL	D7MFP0_ARALL	D7KDT7	D7MFP0	Auxin-responsive family protein.	Uncharacterized protein.	0.412
D7KDT7_ARALL	D7MFP1_ARALL	D7KDT7	D7MFP1	Auxin-responsive family protein.	SAUR_AC1.	0.478
D7KDT7_ARALL	D7MFP2_ARALL	D7KDT7	D7MFP2	Auxin-responsive family protein.	Uncharacterized protein.	0.405
D7KDT8_ARALL	D7KEG2_ARALL	D7KDT8	D7KEG2	Auxin-responsive family protein.	Auxin-responsive family protein.	0.467
D7KDT8_ARALL	D7LCG7_ARALL	D7KDT8	D7LCG7	Auxin-responsive family protein.	Uncharacterized protein.	0.412
D7KDT8_ARALL	D7M048_ARALL	D7KDT8	D7M048	Auxin-responsive family protein.	Uncharacterized protein.	0.459
D7KDT8_ARALL	D7M112_ARALL	D7KDT8	D7M112	Auxin-responsive family protein.	Auxin-responsive family protein.	0.414
D7KDT8_ARALL	D7MFP0_ARALL	D7KDT8	D7MFP0	Auxin-responsive family protein.	Uncharacterized protein.	0.435
D7KDT8_ARALL	D7MFP1_ARALL	D7KDT8	D7MFP1	Auxin-responsive family protein.	SAUR_AC1.	0.478
D7KDT8_ARALL	D7MFP2_ARALL	D7KDT8	D7MFP2	Auxin-responsive family protein.	Uncharacterized protein.	0.405
D7KDT9_ARALL	D7LI67_ARALL	D7KDT9	D7LI67	Uncharacterized protein.	Uncharacterized protein.	0.468
D7KDT9_ARALL	D7MB78_ARALL	D7KDT9	D7MB78	Uncharacterized protein.	Uncharacterized protein.	0.438
D7KDU7_ARALL	D7LI67_ARALL	D7KDU7	D7LI67	Uncharacterized protein.	Uncharacterized protein.	0.426
D7KEG2_ARALL	D7KDT7_ARALL	D7KEG2	D7KDT7	Auxin-responsive family protein.	Auxin-responsive family protein.	0.467
D7KEG2_ARALL	D7KDT8_ARALL	D7KEG2	D7KDT8	Auxin-responsive family protein.	Auxin-responsive family protein.	0.467
D7KEG2_ARALL	D7KFE5_ARALL	D7KEG2	D7KFE5	Auxin-responsive family protein.	Uncharacterized protein.	0.694

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