7 items (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R0GUX8_9BRAS	Uncharacterized protein. (745 aa)
	R0H572_9BRAS	Uncharacterized protein. (1009 aa)
	R0H674_9BRAS	Uncharacterized protein. (555 aa)
	R0H9P0_9BRAS	Uncharacterized protein. (170 aa)
	R0HCT2_9BRAS	Uncharacterized protein. (769 aa)
	R0I0B2_9BRAS	Uncharacterized protein. (1022 aa)
	R0I615_9BRAS	C2 domain-containing protein. (147 aa)

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0GUX8_9BRAS	R0H674_9BRAS	R0GUX8	R0H674	Uncharacterized protein.	Uncharacterized protein.	0.491
R0H572_9BRAS	R0I615_9BRAS	R0H572	R0I615	Uncharacterized protein.	C2 domain-containing protein.	0.760
R0H674_9BRAS	R0GUX8_9BRAS	R0H674	R0GUX8	Uncharacterized protein.	Uncharacterized protein.	0.491
R0H674_9BRAS	R0I0B2_9BRAS	R0H674	R0I0B2	Uncharacterized protein.	Uncharacterized protein.	0.420
R0H9P0_9BRAS	R0I0B2_9BRAS	R0H9P0	R0I0B2	Uncharacterized protein.	Uncharacterized protein.	0.409
R0HCT2_9BRAS	R0I615_9BRAS	R0HCT2	R0I615	Uncharacterized protein.	C2 domain-containing protein.	0.760
R0I0B2_9BRAS	R0H674_9BRAS	R0I0B2	R0H674	Uncharacterized protein.	Uncharacterized protein.	0.420
R0I0B2_9BRAS	R0H9P0_9BRAS	R0I0B2	R0H9P0	Uncharacterized protein.	Uncharacterized protein.	0.409
R0I0B2_9BRAS	R0I615_9BRAS	R0I0B2	R0I615	Uncharacterized protein.	C2 domain-containing protein.	0.760
R0I615_9BRAS	R0H572_9BRAS	R0I615	R0H572	C2 domain-containing protein.	Uncharacterized protein.	0.760
R0I615_9BRAS	R0HCT2_9BRAS	R0I615	R0HCT2	C2 domain-containing protein.	Uncharacterized protein.	0.760
R0I615_9BRAS	R0I0B2_9BRAS	R0I615	R0I0B2	C2 domain-containing protein.	Uncharacterized protein.	0.760