(114 nodes) Mixed, incl. Outer membrane efflux protein, and ABC3 transporter permease protein domain network (Bacteroides uniformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rhaR_1	Putative AraC-family transcriptional regulator. (297 aa)
	CUP25200.1	Outer membrane efflux protein. (420 aa)
	CUP25233.1	Putative ABC transport system%2C lipoprotein. (296 aa)
	ybhF_1	Putative BAC transport system%2C two-fused ATP-binding domains protein. (485 aa)
	ybhS	Putative ABC transport system%2C membrane protein. (367 aa)
	ybhR_1	Putative ABC transport system%2C membrane protein. (371 aa)
	macB_1	Putative ABC transport system%2C membrane protein. (771 aa)
	lolD_1	ABC transporter related protein. (227 aa)
	CUP26234.1	Putative ABC transport system%2C membrane protein. (767 aa)
	CUP26267.1	Putative ABC transport system%2C membrane protein. (767 aa)
	bepE_1	Putative drug resistance transport-related membrane protein; To E.coli EnvD. (1037 aa)
	bepF_1	Putative transport-related protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (367 aa)
	oprM_1	Putative outer membrane exported protein. (477 aa)
	macB_2	Putative ABC transporter ATP-binding protein. (224 aa)
	CUP28591.1	Permease. (785 aa)
	CUP28625.1	Putative ABC transport system%2C membrane protein. (799 aa)
	macB_3	FtsX-related transporter permease. (791 aa)
	CUP28679.1	ABC transporter permease. (795 aa)
	macB_4	Putative transporter permease protein. (801 aa)
	CUP28745.1	RND family efflux transporter MFP subunit. (416 aa)
	CUP28772.1	Putative exported outer membrane protein. (495 aa)
	zraR_2	Putative two component system response regulator. (488 aa)
	fixL	Putative two component system histidine kinase. (321 aa)
	CUP32435.1	KAP P-loop domain-containing protein. (1084 aa)
	CUP32468.1	Predicted ATPase (AAA+ superfamily). (376 aa)
	CUP32611.1	Bifunctional deaminase-reductase domain-containing protein. (140 aa)
	CUP40370.1	Putative outer membrane protein. (475 aa)
	CUP40384.1	Hemolysin D. (331 aa)
	ybhR_2	Transmembrane protein. (796 aa)
	cydB	Cytochrome bd quinol oxidase subunit 2 apoprotein. (382 aa)
	cydA	Cytochrome bd quinol oxidase subunit 1 apoprotein. (524 aa)
	CUP48518.1	Uncharacterised protein. (106 aa)
	oprM_2	Outer membrane efflux protein. (466 aa)
	macA_1	Putative HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (409 aa)
	macB_5	ABC transporter related protein. (248 aa)
	macB_6	ABC transporter permease. (406 aa)
	yehU_1	Signal transduction histidine kinase%2C LytS. (355 aa)
	yehT_1	Two component transcriptional regulator%2C LytTR family. (233 aa)
	oprM_3	Outer membrane efflux protein. (452 aa)
	yiaV	Multidrug resistance efflux pump. (365 aa)
	emrB	MFS transporter. (546 aa)
	adaA_1	Transcriptional regulator%2C AraC family. (288 aa)
	macB_7	Putative ABC transporter ATP-binding protein. (238 aa)
	macB_8	Putative ABC transporter. (419 aa)
	macB_9	ABC transporter ATP-binding protein. (413 aa)
	macA_2	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (367 aa)
	oprM_4	Outer membrane efflux protein. (442 aa)
	frp	NADH dehydrogenase/NAD(P)H nitroreductase. (215 aa)
	oprM_5	Multidrug resistance protein. (468 aa)
	bepE_2	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1048 aa)
	mdtE_1	RND family efflux transporter%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (389 aa)
	ybhR_3	ABC-2 type transporter. (412 aa)
	CUP79874.1	ABC-2 type transporter. (396 aa)
	CUP79901.1	Hemolysin D. (329 aa)
	CUP79920.1	Outer membrane efflux protein. (488 aa)
	nfrA2	Nitroreductase; Belongs to the flavin oxidoreductase frp family. (260 aa)
	CUP85802.1	Outer membrane efflux protein. (408 aa)
	czcA_1	Heavy metal efflux pump%2C CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1040 aa)
	czcB	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (406 aa)
	CUP85872.1	Membrane protein. (136 aa)
	pdhD	Pyridine nucleotide-disulfide oxidoreductase. (458 aa)
	yheS_1	ABC transporter ATP-binding protein. (544 aa)
	CUP97455.1	Outer membrane efflux protein. (424 aa)
	mexB_1	AcrB/AcrD/AcrF family transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1009 aa)
	mexA	Putative conserved lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (347 aa)
	CUQ02007.1	Outer membrane efflux protein. (495 aa)
	zraR_5	Fis family transcriptional regulator. (453 aa)
	zraS	Multi-sensor signal transduction histidine kinase. (437 aa)
	bepF_2	Putative acriflavine resistance protein E precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (424 aa)
	acrD	Putative aminoglycoside efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1036 aa)
	oprM_6	Putative puter membrane protein. (458 aa)
	macB_10	Putative ABC transporter permease component. (434 aa)
	CUQ03568.1	Putative ABC transporter permease component. (423 aa)
	CUQ05076.1	Abortive infection protein. (298 aa)
	oprM_7	RND efflux system%2C outer membrane lipoprotein%2C NodT family. (461 aa)
	mexB_2	Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1139 aa)
	mdtE_2	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (391 aa)
	CUQ14348.1	Uncharacterised protein. (245 aa)
	hutU	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (660 aa)
	hutI	Imidazolonepropionase. (417 aa)
	hutH	Putative histidine ammonia-lyase. (498 aa)
	kstR2	Regulatory protein TetR. (220 aa)
	ttgC	Outer membrane efflux protein. (450 aa)
	mdtE_3	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (338 aa)
	mdtC_1	Cation efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1056 aa)
	CUQ14548.1	Uncharacterised protein. (97 aa)
	CUQ14566.1	Periplasmic protein. (477 aa)
	CUQ14582.1	Periplasmic protein. (318 aa)
	dltB_2	Membrane bound O-acyl transferase MBOAT family protein; Belongs to the membrane-bound acyltransferase family. (502 aa)
	bepF_3	Multidrug efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (365 aa)
	bepE_3	Putative multidrug resistance/siderophore transport related%2C membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1063 aa)
	cusC	Putative transport related%2C lipoprotein. (466 aa)
	CUQ15680.1	Transposase. (302 aa)
	CUQ15702.1	Protein of uncharacterised function (DUF2582). (68 aa)
	CUQ15722.1	Outer membrane efflux protein. (426 aa)
	czcA_2	AcrB/AcrD/AcrF family transporter. (1035 aa)
	CUQ15758.1	Putative lipoprotein. (348 aa)
	rhaR_3	Transcriptional regulator%2C AraC family. (289 aa)
	CUQ16155.1	CAAX amino terminal protease self-immunity. (230 aa)
	macA_3	Efflux transporter%2C RND family%2C MFP subunit. (415 aa)
	macB_11	Putative ABC transporter permease component. (439 aa)
	CUQ25100.1	ABC transporter permease. (431 aa)
	lolD_3	ABC transporter related protein. (221 aa)
	macB_12	Putative ABC transporter permease component. (424 aa)
	CUQ25156.1	Putative ABC transporter ABC permease. (419 aa)
	CUQ25172.1	Protein of uncharacterised function (DUF2807). (207 aa)
	macB_13	Putative ABC transporter permease component. (432 aa)
	CUQ25207.1	ABC transporter permease. (412 aa)
	macB_14	Putative ABC transporter permease component. (410 aa)
	macB_15	ABC transporter permease. (415 aa)
	puuP	Putative amino acid transporter. (546 aa)
	tolC	Putative outer membrane protein. (441 aa)
	mdtC_2	Putative AcrB/AcrD/AcrF family efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1010 aa)
	mdtE_4	Putative HlyD-family efflux transporter component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (360 aa)

Your Current Organism:

Bacteroides uniformis

NCBI taxonomy Id: 820
Other names: ATCC 8492, B. uniformis, CCUG 4942, CIP 103695, DSM 6597, JCM 5828, NCTC 13054

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUP25200.1	CUP25233.1	ERS852554_00109	ERS852554_00110	Outer membrane efflux protein.	Putative ABC transport system%2C lipoprotein.	0.966
CUP25200.1	rhaR_1	ERS852554_00109	ERS852554_00108	Outer membrane efflux protein.	Putative AraC-family transcriptional regulator.	0.688
CUP25200.1	ybhF_1	ERS852554_00109	ERS852554_00111	Outer membrane efflux protein.	Putative BAC transport system%2C two-fused ATP-binding domains protein.	0.944
CUP25200.1	ybhR_1	ERS852554_00109	ERS852554_00113	Outer membrane efflux protein.	Putative ABC transport system%2C membrane protein.	0.908
CUP25200.1	ybhR_2	ERS852554_00109	ERS852554_00620	Outer membrane efflux protein.	Transmembrane protein.	0.480
CUP25200.1	ybhR_3	ERS852554_00109	ERS852554_01791	Outer membrane efflux protein.	ABC-2 type transporter.	0.480
CUP25200.1	ybhS	ERS852554_00109	ERS852554_00112	Outer membrane efflux protein.	Putative ABC transport system%2C membrane protein.	0.929
CUP25200.1	yiaV	ERS852554_00109	ERS852554_00964	Outer membrane efflux protein.	Multidrug resistance efflux pump.	0.462
CUP25233.1	CUP25200.1	ERS852554_00110	ERS852554_00109	Putative ABC transport system%2C lipoprotein.	Outer membrane efflux protein.	0.966
CUP25233.1	CUQ15722.1	ERS852554_00110	ERS852554_03158	Putative ABC transport system%2C lipoprotein.	Outer membrane efflux protein.	0.470
CUP25233.1	rhaR_1	ERS852554_00110	ERS852554_00108	Putative ABC transport system%2C lipoprotein.	Putative AraC-family transcriptional regulator.	0.463
CUP25233.1	ttgC	ERS852554_00110	ERS852554_03141	Putative ABC transport system%2C lipoprotein.	Outer membrane efflux protein.	0.457
CUP25233.1	ybhF_1	ERS852554_00110	ERS852554_00111	Putative ABC transport system%2C lipoprotein.	Putative BAC transport system%2C two-fused ATP-binding domains protein.	0.966
CUP25233.1	ybhR_1	ERS852554_00110	ERS852554_00113	Putative ABC transport system%2C lipoprotein.	Putative ABC transport system%2C membrane protein.	0.921
CUP25233.1	ybhR_2	ERS852554_00110	ERS852554_00620	Putative ABC transport system%2C lipoprotein.	Transmembrane protein.	0.767
CUP25233.1	ybhR_3	ERS852554_00110	ERS852554_01791	Putative ABC transport system%2C lipoprotein.	ABC-2 type transporter.	0.737
CUP25233.1	ybhS	ERS852554_00110	ERS852554_00112	Putative ABC transport system%2C lipoprotein.	Putative ABC transport system%2C membrane protein.	0.946
CUP26234.1	CUP26267.1	ERS852554_00143	ERS852554_00144	Putative ABC transport system%2C membrane protein.	Putative ABC transport system%2C membrane protein.	0.740
CUP26234.1	CUP28745.1	ERS852554_00143	ERS852554_00223	Putative ABC transport system%2C membrane protein.	RND family efflux transporter MFP subunit.	0.805
CUP26234.1	CUQ02007.1	ERS852554_00143	ERS852554_02630	Putative ABC transport system%2C membrane protein.	Outer membrane efflux protein.	0.490