(43 nodes) Mixed, incl. ABC3 transporter permease protein domain, and MacB, ATP-binding domain network (Bacteroides uniformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	macB_1	Putative ABC transport system%2C membrane protein. (771 aa)
	lolD_1	ABC transporter related protein. (227 aa)
	CUP26234.1	Putative ABC transport system%2C membrane protein. (767 aa)
	CUP26267.1	Putative ABC transport system%2C membrane protein. (767 aa)
	macB_2	Putative ABC transporter ATP-binding protein. (224 aa)
	CUP28591.1	Permease. (785 aa)
	CUP28625.1	Putative ABC transport system%2C membrane protein. (799 aa)
	macB_3	FtsX-related transporter permease. (791 aa)
	CUP28679.1	ABC transporter permease. (795 aa)
	macB_4	Putative transporter permease protein. (801 aa)
	CUP28745.1	RND family efflux transporter MFP subunit. (416 aa)
	CUP28772.1	Putative exported outer membrane protein. (495 aa)
	zraR_2	Putative two component system response regulator. (488 aa)
	fixL	Putative two component system histidine kinase. (321 aa)
	cydB	Cytochrome bd quinol oxidase subunit 2 apoprotein. (382 aa)
	cydA	Cytochrome bd quinol oxidase subunit 1 apoprotein. (524 aa)
	CUP48518.1	Uncharacterised protein. (106 aa)
	oprM_2	Outer membrane efflux protein. (466 aa)
	macA_1	Putative HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (409 aa)
	macB_5	ABC transporter related protein. (248 aa)
	macB_6	ABC transporter permease. (406 aa)
	yehU_1	Signal transduction histidine kinase%2C LytS. (355 aa)
	yehT_1	Two component transcriptional regulator%2C LytTR family. (233 aa)
	macB_7	Putative ABC transporter ATP-binding protein. (238 aa)
	macB_8	Putative ABC transporter. (419 aa)
	macB_9	ABC transporter ATP-binding protein. (413 aa)
	macA_2	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (367 aa)
	CUQ02007.1	Outer membrane efflux protein. (495 aa)
	zraR_5	Fis family transcriptional regulator. (453 aa)
	zraS	Multi-sensor signal transduction histidine kinase. (437 aa)
	macB_10	Putative ABC transporter permease component. (434 aa)
	CUQ03568.1	Putative ABC transporter permease component. (423 aa)
	macA_3	Efflux transporter%2C RND family%2C MFP subunit. (415 aa)
	macB_11	Putative ABC transporter permease component. (439 aa)
	CUQ25100.1	ABC transporter permease. (431 aa)
	lolD_3	ABC transporter related protein. (221 aa)
	macB_12	Putative ABC transporter permease component. (424 aa)
	CUQ25156.1	Putative ABC transporter ABC permease. (419 aa)
	CUQ25172.1	Protein of uncharacterised function (DUF2807). (207 aa)
	macB_13	Putative ABC transporter permease component. (432 aa)
	CUQ25207.1	ABC transporter permease. (412 aa)
	macB_14	Putative ABC transporter permease component. (410 aa)
	macB_15	ABC transporter permease. (415 aa)

Your Current Organism:

Bacteroides uniformis

NCBI taxonomy Id: 820
Other names: ATCC 8492, B. uniformis, CCUG 4942, CIP 103695, DSM 6597, JCM 5828, NCTC 13054

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUP26234.1	CUP26267.1	ERS852554_00143	ERS852554_00144	Putative ABC transport system%2C membrane protein.	Putative ABC transport system%2C membrane protein.	0.740
CUP26234.1	CUP28745.1	ERS852554_00143	ERS852554_00223	Putative ABC transport system%2C membrane protein.	RND family efflux transporter MFP subunit.	0.805
CUP26234.1	CUQ02007.1	ERS852554_00143	ERS852554_02630	Putative ABC transport system%2C membrane protein.	Outer membrane efflux protein.	0.490
CUP26234.1	CUQ03568.1	ERS852554_00143	ERS852554_02698	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.565
CUP26234.1	CUQ25100.1	ERS852554_00143	ERS852554_03631	Putative ABC transport system%2C membrane protein.	ABC transporter permease.	0.534
CUP26234.1	CUQ25156.1	ERS852554_00143	ERS852554_03634	Putative ABC transport system%2C membrane protein.	Putative ABC transporter ABC permease.	0.524
CUP26234.1	CUQ25207.1	ERS852554_00143	ERS852554_03637	Putative ABC transport system%2C membrane protein.	ABC transporter permease.	0.621
CUP26234.1	fixL	ERS852554_00143	ERS852554_00226	Putative ABC transport system%2C membrane protein.	Putative two component system histidine kinase.	0.709
CUP26234.1	lolD_1	ERS852554_00143	ERS852554_00142	Putative ABC transport system%2C membrane protein.	ABC transporter related protein.	0.959
CUP26234.1	lolD_3	ERS852554_00143	ERS852554_03632	Putative ABC transport system%2C membrane protein.	ABC transporter related protein.	0.711
CUP26234.1	macA_3	ERS852554_00143	ERS852554_03629	Putative ABC transport system%2C membrane protein.	Efflux transporter%2C RND family%2C MFP subunit.	0.762
CUP26234.1	macB_1	ERS852554_00143	ERS852554_00141	Putative ABC transport system%2C membrane protein.	Putative ABC transport system%2C membrane protein.	0.656
CUP26234.1	macB_10	ERS852554_00143	ERS852554_02697	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.456
CUP26234.1	macB_11	ERS852554_00143	ERS852554_03630	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.501
CUP26234.1	macB_12	ERS852554_00143	ERS852554_03633	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.605
CUP26234.1	macB_13	ERS852554_00143	ERS852554_03636	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.592
CUP26234.1	macB_14	ERS852554_00143	ERS852554_03638	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.444
CUP26234.1	macB_15	ERS852554_00143	ERS852554_03639	Putative ABC transport system%2C membrane protein.	ABC transporter permease.	0.672
CUP26234.1	macB_2	ERS852554_00143	ERS852554_00217	Putative ABC transport system%2C membrane protein.	Putative ABC transporter ATP-binding protein.	0.871
CUP26234.1	macB_5	ERS852554_00143	ERS852554_00898	Putative ABC transport system%2C membrane protein.	ABC transporter related protein.	0.557