Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CUP33424.1 | CUP57264.1 | ERS852554_00383 | ERS852554_01078 | DNA-directed RNA polymerase subunit alpha. | Uncharacterised protein. | 0.753 |
| CUP33424.1 | CUP77730.1 | ERS852554_00383 | ERS852554_01713 | DNA-directed RNA polymerase subunit alpha. | Uncharacterized ACR%2C COG1399. | 0.606 |
| CUP33424.1 | CUP92640.1 | ERS852554_00383 | ERS852554_02310 | DNA-directed RNA polymerase subunit alpha. | Uncharacterised protein. | 0.753 |
| CUP33424.1 | efp | ERS852554_00383 | ERS852554_01228 | DNA-directed RNA polymerase subunit alpha. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.486 |
| CUP33424.1 | frr | ERS852554_00383 | ERS852554_03719 | DNA-directed RNA polymerase subunit alpha. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.626 |
| CUP33424.1 | fusA_1 | ERS852554_00383 | ERS852554_01900 | DNA-directed RNA polymerase subunit alpha. | Translation elongation factor 2 (EF-2/EF-G). | 0.636 |
| CUP33424.1 | fusA_2 | ERS852554_00383 | ERS852554_03094 | DNA-directed RNA polymerase subunit alpha. | Putative translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF [...] | 0.636 |
| CUP33424.1 | infA | ERS852554_00383 | ERS852554_03118 | DNA-directed RNA polymerase subunit alpha. | Putative translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.747 |
| CUP33424.1 | infB | ERS852554_00383 | ERS852554_03011 | DNA-directed RNA polymerase subunit alpha. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.634 |
| CUP33424.1 | infC | ERS852554_00383 | ERS852554_02758 | DNA-directed RNA polymerase subunit alpha. | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.705 |
| CUP33424.1 | map_2 | ERS852554_00383 | ERS852554_03117 | DNA-directed RNA polymerase subunit alpha. | Methionine aminopeptidase%2C type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.600 |
| CUP33424.1 | nusA | ERS852554_00383 | ERS852554_03010 | DNA-directed RNA polymerase subunit alpha. | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 0.899 |
| CUP33424.1 | rimM | ERS852554_00383 | ERS852554_02064 | DNA-directed RNA polymerase subunit alpha. | 16S rRNA-processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.725 |
| CUP33424.1 | rplA | ERS852554_00383 | ERS852554_03086 | DNA-directed RNA polymerase subunit alpha. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.785 |
| CUP33424.1 | rplB | ERS852554_00383 | ERS852554_03099 | DNA-directed RNA polymerase subunit alpha. | Putative 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.870 |
| CUP33424.1 | rplC | ERS852554_00383 | ERS852554_03096 | DNA-directed RNA polymerase subunit alpha. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.844 |
| CUP33424.1 | rplD | ERS852554_00383 | ERS852554_03097 | DNA-directed RNA polymerase subunit alpha. | Putative 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.753 |
| CUP33424.1 | rplE | ERS852554_00383 | ERS852554_03108 | DNA-directed RNA polymerase subunit alpha. | Putative 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.843 |
| CUP33424.1 | rplF | ERS852554_00383 | ERS852554_03111 | DNA-directed RNA polymerase subunit alpha. | Putative 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.867 |
| CUP33424.1 | rplI | ERS852554_00383 | ERS852554_01907 | DNA-directed RNA polymerase subunit alpha. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.837 |
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