(16 nodes) MacB-like periplasmic core domain network (Bacteroides uniformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	macB_1	Putative ABC transport system%2C membrane protein. (771 aa)
	CUP26234.1	Putative ABC transport system%2C membrane protein. (767 aa)
	CUP28591.1	Permease. (785 aa)
	CUP28625.1	Putative ABC transport system%2C membrane protein. (799 aa)
	macB_11	Putative ABC transporter permease component. (439 aa)
	macB_9	ABC transporter ATP-binding protein. (413 aa)
	macB_8	Putative ABC transporter. (419 aa)
	macB_6	ABC transporter permease. (406 aa)
	macB_4	Putative transporter permease protein. (801 aa)
	macB_3	FtsX-related transporter permease. (791 aa)
	lolE_2	Putative transmembrane permease. (414 aa)
	macB_15	ABC transporter permease. (415 aa)
	macB_14	Putative ABC transporter permease component. (410 aa)
	macB_13	Putative ABC transporter permease component. (432 aa)
	macB_12	Putative ABC transporter permease component. (424 aa)
	CUQ25100.1	ABC transporter permease. (431 aa)

Your Current Organism:

Bacteroides uniformis

NCBI taxonomy Id: 820
Other names: ATCC 8492, B. uniformis, CCUG 4942, CIP 103695, DSM 6597, JCM 5828, NCTC 13054

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUP26234.1	CUQ25100.1	ERS852554_00143	ERS852554_03631	Putative ABC transport system%2C membrane protein.	ABC transporter permease.	0.534
CUP26234.1	macB_1	ERS852554_00143	ERS852554_00141	Putative ABC transport system%2C membrane protein.	Putative ABC transport system%2C membrane protein.	0.656
CUP26234.1	macB_11	ERS852554_00143	ERS852554_03630	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.501
CUP26234.1	macB_12	ERS852554_00143	ERS852554_03633	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.605
CUP26234.1	macB_13	ERS852554_00143	ERS852554_03636	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.592
CUP26234.1	macB_14	ERS852554_00143	ERS852554_03638	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.444
CUP26234.1	macB_15	ERS852554_00143	ERS852554_03639	Putative ABC transport system%2C membrane protein.	ABC transporter permease.	0.672
CUP28591.1	CUP28625.1	ERS852554_00218	ERS852554_00219	Permease.	Putative ABC transport system%2C membrane protein.	0.830
CUP28591.1	CUQ25100.1	ERS852554_00218	ERS852554_03631	Permease.	ABC transporter permease.	0.626
CUP28591.1	macB_11	ERS852554_00218	ERS852554_03630	Permease.	Putative ABC transporter permease component.	0.455
CUP28591.1	macB_12	ERS852554_00218	ERS852554_03633	Permease.	Putative ABC transporter permease component.	0.463
CUP28591.1	macB_13	ERS852554_00218	ERS852554_03636	Permease.	Putative ABC transporter permease component.	0.522
CUP28591.1	macB_15	ERS852554_00218	ERS852554_03639	Permease.	ABC transporter permease.	0.640
CUP28591.1	macB_3	ERS852554_00218	ERS852554_00220	Permease.	FtsX-related transporter permease.	0.763
CUP28591.1	macB_4	ERS852554_00218	ERS852554_00222	Permease.	Putative transporter permease protein.	0.703
CUP28625.1	CUP28591.1	ERS852554_00219	ERS852554_00218	Putative ABC transport system%2C membrane protein.	Permease.	0.830
CUP28625.1	CUQ25100.1	ERS852554_00219	ERS852554_03631	Putative ABC transport system%2C membrane protein.	ABC transporter permease.	0.641
CUP28625.1	macB_11	ERS852554_00219	ERS852554_03630	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.473
CUP28625.1	macB_12	ERS852554_00219	ERS852554_03633	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.509
CUP28625.1	macB_13	ERS852554_00219	ERS852554_03636	Putative ABC transport system%2C membrane protein.	Putative ABC transporter permease component.	0.587