(15 nodes) Biotin-lipoyl like network (Bacteroides uniformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CUQ17892.1	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (357 aa)
	CUP44947.1	Pyruvate carboxylase. (592 aa)
	macA_1	Putative HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (409 aa)
	yiaV	Multidrug resistance efflux pump. (365 aa)
	macA_2	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (367 aa)
	mdtE_1	RND family efflux transporter%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (389 aa)
	CUP79901.1	Hemolysin D. (329 aa)
	hlyD_2	Secretion protein HlyD family protein. (390 aa)
	czcB	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (406 aa)
	bepF_2	Putative acriflavine resistance protein E precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (424 aa)
	mdtE_2	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (391 aa)
	mdtE_4	Putative HlyD-family efflux transporter component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (360 aa)
	bepF_3	Multidrug efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (365 aa)
	bepF_1	Putative transport-related protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (367 aa)
	CUP40384.1	Hemolysin D. (331 aa)

Your Current Organism:

Bacteroides uniformis

NCBI taxonomy Id: 820
Other names: ATCC 8492, B. uniformis, CCUG 4942, CIP 103695, DSM 6597, JCM 5828, NCTC 13054

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUP40384.1	yiaV	ERS852554_00619	ERS852554_00964	Hemolysin D.	Multidrug resistance efflux pump.	0.498
bepF_3	yiaV	ERS852554_03150	ERS852554_00964	Multidrug efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug resistance efflux pump.	0.507
mdtE_1	yiaV	ERS852554_01675	ERS852554_00964	RND family efflux transporter%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug resistance efflux pump.	0.454
mdtE_2	yiaV	ERS852554_02936	ERS852554_00964	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug resistance efflux pump.	0.520
yiaV	CUP40384.1	ERS852554_00964	ERS852554_00619	Multidrug resistance efflux pump.	Hemolysin D.	0.498
yiaV	bepF_3	ERS852554_00964	ERS852554_03150	Multidrug resistance efflux pump.	Multidrug efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.507
yiaV	mdtE_1	ERS852554_00964	ERS852554_01675	Multidrug resistance efflux pump.	RND family efflux transporter%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.454
yiaV	mdtE_2	ERS852554_00964	ERS852554_02936	Multidrug resistance efflux pump.	Efflux transporter%2C RND family%2C MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.520