STRINGSTRING
CYJ10_33455 CYJ10_33455 CYJ10_33335 CYJ10_33335 GCA_000974605_00354 GCA_000974605_00354 GCA_000974605_00355 GCA_000974605_00355 GCA_000974605_00502 GCA_000974605_00502 GCA_000974605_00522 GCA_000974605_00522 rph rph CYJ10_19405 CYJ10_19405 GCA_000974605_00930 GCA_000974605_00930 polA polA dnaG dnaG GCA_000974605_01072 GCA_000974605_01072 CYJ10_18825 CYJ10_18825 CYJ10_32635 CYJ10_32635 dnaQ dnaQ GCA_000974605_01705 GCA_000974605_01705 nadD nadD CYJ10_21125 CYJ10_21125 GCA_000974605_01834 GCA_000974605_01834 fliA fliA CYJ10_02905 CYJ10_02905 GCA_000974605_06226 GCA_000974605_06226 GCA_000974605_06191 GCA_000974605_06191 pcnB pcnB CYJ10_07010 CYJ10_07010 CysD CysD CYJ10_07255 CYJ10_07255 CYJ10_07285 CYJ10_07285 CYJ10_07420 CYJ10_07420 CYJ10_23935 CYJ10_23935 GCA_000974605_05296 GCA_000974605_05296 GCA_000974605_05131 GCA_000974605_05131 CYJ10_03650 CYJ10_03650 GCA_000974605_01973 GCA_000974605_01973 GCA_000974605_02007 GCA_000974605_02007 dinB dinB rpoZ rpoZ CYJ10_20760 CYJ10_20760 CYJ10_25305 CYJ10_25305 glnD glnD GCA_000974605_02309 GCA_000974605_02309 kdsB kdsB CYJ10_30120 CYJ10_30120 GCA_000974605_02801 GCA_000974605_02801 pnp pnp selO selO rfaE1 rfaE1 ispD ispD CYJ10_01100 CYJ10_01100 CYJ10_18615 CYJ10_18615 dnaE2 dnaE2 ligD ligD CYJ10_02645 CYJ10_02645 coaD coaD CYJ10_31145 CYJ10_31145 CYJ10_08730 CYJ10_08730 CYJ10_23140 CYJ10_23140 galU galU rpoA rpoA rpoC rpoC glmU glmU cca cca glnE glnE CYJ10_28655 CYJ10_28655 ltrA ltrA CYJ10_06570 CYJ10_06570 CYJ10_03295 CYJ10_03295 GCA_000974605_00023 GCA_000974605_00023 rfaE2 rfaE2 CYJ10_19320 CYJ10_19320
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CYJ10_33455Unannotated protein. (793 aa)
CYJ10_33335Unannotated protein. (111 aa)
GCA_000974605_00354Unannotated protein. (1050 aa)
GCA_000974605_00355Unannotated protein. (452 aa)
GCA_000974605_00502Unannotated protein. (209 aa)
GCA_000974605_00522Unannotated protein. (209 aa)
rphUnannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa)
CYJ10_19405Unannotated protein. (238 aa)
GCA_000974605_00930Unannotated protein. (250 aa)
polAUnannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (499 aa)
dnaGUnannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (613 aa)
GCA_000974605_01072Unannotated protein. (329 aa)
CYJ10_18825Unannotated protein. (415 aa)
CYJ10_32635Unannotated protein. (215 aa)
dnaQUnannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (241 aa)
GCA_000974605_01705Unannotated protein. (530 aa)
nadDUnannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (237 aa)
CYJ10_21125Unannotated protein. (1167 aa)
GCA_000974605_01834Unannotated protein. (436 aa)
fliAUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (238 aa)
CYJ10_02905Unannotated protein. (225 aa)
GCA_000974605_06226Unannotated protein. (336 aa)
GCA_000974605_06191Unannotated protein. (293 aa)
pcnBUnannotated protein; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (543 aa)
CYJ10_07010Unannotated protein; Belongs to the ribF family. (329 aa)
CysDUnannotated protein. (323 aa)
CYJ10_07255Unannotated protein; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (434 aa)
CYJ10_07285Unannotated protein. (144 aa)
CYJ10_07420Unannotated protein. (255 aa)
CYJ10_23935Unannotated protein. (525 aa)
GCA_000974605_05296Unannotated protein. (390 aa)
GCA_000974605_05131Unannotated protein. (214 aa)
CYJ10_03650Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (326 aa)
GCA_000974605_01973Unannotated protein. (46 aa)
GCA_000974605_02007Unannotated protein. (589 aa)
dinBUnannotated protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (386 aa)
rpoZUnannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (67 aa)
CYJ10_20760Unannotated protein. (217 aa)
CYJ10_25305Unannotated protein; Belongs to the CDS family. (273 aa)
glnDUnannotated protein; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. (496 aa)
GCA_000974605_02309Unannotated protein. (380 aa)
kdsBUnannotated protein; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (269 aa)
CYJ10_30120Unannotated protein. (79 aa)
GCA_000974605_02801Unannotated protein. (203 aa)
pnpUnannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (722 aa)
selOUnannotated protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (520 aa)
rfaE1Unannotated protein. (314 aa)
ispDUnannotated protein; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). (213 aa)
CYJ10_01100Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] (371 aa)
CYJ10_18615Unannotated protein. (517 aa)
dnaE2Unannotated protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1194 aa)
ligDUnannotated protein. (897 aa)
CYJ10_02645Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (493 aa)
coaDUnannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (161 aa)
CYJ10_31145Unannotated protein. (335 aa)
CYJ10_08730Unannotated protein. (408 aa)
CYJ10_23140Unannotated protein. (537 aa)
galUUnannotated protein. (291 aa)
rpoAUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (326 aa)
rpoCUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1411 aa)
glmUUnannotated protein; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (454 aa)
ccaUnannotated protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. (413 aa)
glnEUnannotated protein; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) [...] (866 aa)
CYJ10_28655Unannotated protein; Belongs to the mannose-6-phosphate isomerase type 2 family. (519 aa)
ltrAUnannotated protein. (566 aa)
CYJ10_06570Unannotated protein. (356 aa)
CYJ10_03295Unannotated protein. (232 aa)
GCA_000974605_00023Unannotated protein. (510 aa)
rfaE2Unannotated protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. (164 aa)
CYJ10_19320Unannotated protein. (426 aa)
Your Current Organism:
Cupriavidus pauculus
NCBI taxonomy Id: 82633
Other names: ATCC 700817, C. pauculus, CCUG 12507, CDC E6793, CDC group IVc-2, CIP 105943, DSM 17313, JCM 11286, LMG 3244, LMG:3244, Ralstonia paucula, Wautersia paucula
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