STRINGSTRING
CYJ10_16495 CYJ10_16495 CYJ10_05280 CYJ10_05280 rpoD rpoD rpoS rpoS CYJ10_04145 CYJ10_04145 fliA fliA rpoE rpoE CYJ10_20370 CYJ10_20370 rpoH rpoH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CYJ10_16495Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (190 aa)
CYJ10_05280Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (177 aa)
rpoDUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (854 aa)
rpoSUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (387 aa)
CYJ10_04145Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (207 aa)
fliAUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (238 aa)
rpoEUnannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa)
CYJ10_20370Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
rpoHUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (311 aa)
Your Current Organism:
Cupriavidus pauculus
NCBI taxonomy Id: 82633
Other names: ATCC 700817, C. pauculus, CCUG 12507, CDC E6793, CDC group IVc-2, CIP 105943, DSM 17313, JCM 11286, LMG 3244, LMG:3244, Ralstonia paucula, Wautersia paucula
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