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flgM flgM rppH_2 rppH_2 betI betI CspJ CspJ ANJ93890.1 ANJ93890.1 lexA lexA ANJ93676.1 ANJ93676.1 gltC_2 gltC_2 metJ metJ rraA rraA phoU phoU rbsR_1 rbsR_1 mtlR mtlR inh_1 inh_1 nsrR nsrR pnp_3 pnp_3 treR treR rraB rraB badR badR yjjK_1 yjjK_1 trpR trpR sgrR_1 sgrR_1 rsmA rsmA ANJ92763.1 ANJ92763.1 ANJ92749.1 ANJ92749.1 nrdR_1 nrdR_1 acrR_1 acrR_1 ANJ92451.1 ANJ92451.1 CspE_1 CspE_1 yfiR yfiR ybeB ybeB fur fur CspC_2 CspC_2 cnu cnu ratA ratA CspC_1 CspC_1 purR_2 purR_2 nemR_1 nemR_1 yedJ yedJ seqA seqA yqjI yqjI yvdT yvdT eco eco ANJ91938.1 ANJ91938.1 ANJ91909.1 ANJ91909.1 rutR_2 rutR_2 rne rne CspG CspG yvoA yvoA rnb rnb paaX paaX yffB yffB hda hda ANJ94593.1 ANJ94593.1 rseA rseA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
flgMFlagellar biosynthesis anti-sigma factor FlgM; Regulates the flagellar specific sigma28 transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
rppH_2RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (175 aa)
betIBetI family transcriptional regulator; Repressor involved in choline regulation of the bet genes. (207 aa)
CspJCold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
ANJ93890.1Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
lexALexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response). (202 aa)
ANJ93676.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
gltC_2Transcriptional regulator HdfR; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon. (275 aa)
metJTranscriptional repressor protein MetJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family. (105 aa)
rraARibonuclease activity regulator protein RraA; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities of the degradosome. (161 aa)
phoUTranscriptional regulator PhoU; Part of the phosphate (Pho) regulon, which plays a key role in phosphate homeostasis. PhoU is essential for the repression of the Pho regulon at high phosphate conditions. (244 aa)
rbsR_1LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
mtlRTranscriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
inh_1Alkaline proteinase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
nsrRTranscriptional repressor NsrR; Nitric oxide-sensitive repressor of genes involved in protecting the cell against nitrosative stress. May require iron for activity. (141 aa)
pnp_3Polynucleotide phosphorylase/polyadenylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
treRRegulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
rraBRegulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
badRHomoprotocatechuate degradative operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
yjjK_1ABC transporter ATP-binding protein; ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
trpRTrp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region. (109 aa)
sgrR_1Transcriptional regulator SgrR; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain. (553 aa)
rsmACarbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (61 aa)
ANJ92763.1Tail assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
ANJ92749.1Repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
nrdR_1NrdR family transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (149 aa)
acrR_1Transcriptional regulator; Regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
ANJ92451.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
CspE_1Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
yfiRTetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
ybeBRibosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (105 aa)
furFerric uptake regulator; Negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (148 aa)
CspC_2Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
cnuoriC-binding nucleoid-associated protein; YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
ratACyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
CspC_1Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
purR_2Transcriptional regulator; Binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
nemR_1Transcriptional repressor NemR; Represses nemA which is involved in degradation of N-ethylmaleimide; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
yedJPhosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
seqAReplication initiation regulator SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. (179 aa)
yqjIPadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
yvdTBetI family transcriptional regulator; Repressor involved in choline regulation of the bet genes. (198 aa)
ecoEcotin; General inhibitor of pancreatic serine proteases: inhibits chymotrypsin, trypsin, elastases, factor X, kallikrein as well as a variety of other proteases. (170 aa)
ANJ91938.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
ANJ91909.1Tail fiber assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
rutR_2TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
rneRibonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (1129 aa)
CspGCold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
yvoAGntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
rnbExoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. (644 aa)
paaXPhenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
yffBReductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family. (121 aa)
hdaControls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DnaA family. (233 aa)
ANJ94593.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1663 aa)
rseAanti-RNA polymerase sigma factor SigE; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic protea [...] (217 aa)
Your Current Organism:
Serratia plymuthica
NCBI taxonomy Id: 82996
Other names: ATCC 183, Bacterium plymuthicum, CCUG 14509, CIP 103239, DSM 4540, LMG 7886, LMG:7886, NBRC 102599, NCTC 12961, S. plymuthica, Serratia sp. DBLH13
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