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tap_3 tap_3 ANJ95831.1 ANJ95831.1 tonB tonB hnr hnr fhuA_1 fhuA_1 fecA_2 fecA_2 cheY cheY cheB_1 cheB_1 tsr tsr ANJ95176.1 ANJ95176.1 fhuA_2 fhuA_2 rcsD rcsD fepA fepA fpvA fpvA baeR baeR creB creB yqfA yqfA fhuA_4 fhuA_4 glnG glnG tar_1 tar_1 tar_2 tar_2 fhaB_1 fhaB_1 iutA_2 iutA_2 FyuA_1 FyuA_1 phoB phoB kdpE kdpE ANJ91642.1 ANJ91642.1 phoP_1 phoP_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tap_3Methyl-accepting protein IV; Mediates taxis toward dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
ANJ95831.1Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (140 aa)
tonBEnergy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (246 aa)
hnrResponse regulator of RpoS; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (337 aa)
fhuA_1Ferrioxamine B receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (705 aa)
fecA_2TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (715 aa)
cheYChemotaxis protein CheY; Chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
cheB_1Chemotaxis protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (349 aa)
tsrChemotaxis protein; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
ANJ95176.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
fhuA_2Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)
rcsDtRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. (900 aa)
fepAFep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology. (759 aa)
fpvATonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
baeRResponse regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
creBResponse regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
yqfAHemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
fhuA_4Involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
glnGNitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (470 aa)
tar_1Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (641 aa)
tar_2Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)
fhaB_1Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
iutA_2Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
FyuA_1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
phoBTranscriptional regulator PhoB; Two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
kdpEResponse regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
ANJ91642.1Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (650 aa)
phoP_1Response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
Your Current Organism:
Serratia plymuthica
NCBI taxonomy Id: 82996
Other names: ATCC 183, Bacterium plymuthicum, CCUG 14509, CIP 103239, DSM 4540, LMG 7886, LMG:7886, NBRC 102599, NCTC 12961, S. plymuthica, Serratia sp. DBLH13
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