15 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chek1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (474 aa)
	chek1-2	Protein kinase domain-containing protein. (510 aa)
	Cdc25a.S	Rhodanese domain-containing protein. (172 aa)
	Atr.L	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2654 aa)
	atrip	Uncharacterized protein. (801 aa)
	Rad26	Uncharacterized protein. (798 aa)
	Cdc25c1	Rhodanese domain-containing protein. (550 aa)
	A0A1L8GWA8	Uncharacterized protein. (209 aa)
	Chek2.L	Uncharacterized protein. (392 aa)
	rad9b	Cell cycle checkpoint control protein; Belongs to the rad9 family. (483 aa)
	Rad17.L	Uncharacterized protein. (674 aa)
	rad1	Uncharacterized protein. (283 aa)
	Clspn.S	Claspin. (1286 aa)
	rad9a	Cell cycle checkpoint control protein; Belongs to the rad9 family. (377 aa)
	Hus1	Checkpoint protein; Belongs to the HUS1 family. (282 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GWA8	Atr.L	A0A1L8GWA8	A0A1L8GAP7	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.695
A0A1L8GWA8	Clspn.S	A0A1L8GWA8	F8WKR8	Uncharacterized protein.	Claspin.	0.710
A0A1L8GWA8	Hus1	A0A1L8GWA8	Q8JHD8	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.929
A0A1L8GWA8	Rad17.L	A0A1L8GWA8	A0A1L8I1Y0	Uncharacterized protein.	Uncharacterized protein.	0.571
A0A1L8GWA8	Rad26	A0A1L8GWA8	A0A1L8GP12	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A1L8GWA8	atrip	A0A1L8GWA8	A0A1L8GH95	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A1L8GWA8	chek1	A0A1L8GWA8	A0A1L8FFS1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.635
A0A1L8GWA8	chek1-2	A0A1L8GWA8	A0A1L8FL95	Uncharacterized protein.	Protein kinase domain-containing protein.	0.635
A0A1L8GWA8	rad1	A0A1L8GWA8	A0A1L8I2M6	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A1L8GWA8	rad9a	A0A1L8GWA8	Q7ZZU5	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.816
A0A1L8GWA8	rad9b	A0A1L8GWA8	A0A1L8I188	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.816
Atr.L	A0A1L8GWA8	A0A1L8GAP7	A0A1L8GWA8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.695
Atr.L	Cdc25a.S	A0A1L8GAP7	A0A1L8FQA3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Rhodanese domain-containing protein.	0.674
Atr.L	Cdc25c1	A0A1L8GAP7	A0A1L8GUV6	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Rhodanese domain-containing protein.	0.776
Atr.L	Chek2.L	A0A1L8GAP7	A0A1L8I0A0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.999
Atr.L	Clspn.S	A0A1L8GAP7	F8WKR8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Claspin.	0.955
Atr.L	Hus1	A0A1L8GAP7	Q8JHD8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Checkpoint protein; Belongs to the HUS1 family.	0.999
Atr.L	Rad17.L	A0A1L8GAP7	A0A1L8I1Y0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.991
Atr.L	Rad26	A0A1L8GAP7	A0A1L8GP12	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.999
Atr.L	atrip	A0A1L8GAP7	A0A1L8GH95	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.999