5 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rad9b	Cell cycle checkpoint control protein; Belongs to the rad9 family. (483 aa)
	Rad17.L	Uncharacterized protein. (674 aa)
	rad1	Uncharacterized protein. (283 aa)
	rad9a	Cell cycle checkpoint control protein; Belongs to the rad9 family. (377 aa)
	Hus1	Checkpoint protein; Belongs to the HUS1 family. (282 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Hus1	Rad17.L	Q8JHD8	A0A1L8I1Y0	Checkpoint protein; Belongs to the HUS1 family.	Uncharacterized protein.	0.999
Hus1	rad1	Q8JHD8	A0A1L8I2M6	Checkpoint protein; Belongs to the HUS1 family.	Uncharacterized protein.	0.999
Hus1	rad9a	Q8JHD8	Q7ZZU5	Checkpoint protein; Belongs to the HUS1 family.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.999
Hus1	rad9b	Q8JHD8	A0A1L8I188	Checkpoint protein; Belongs to the HUS1 family.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.998
Rad17.L	Hus1	A0A1L8I1Y0	Q8JHD8	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.999
Rad17.L	rad1	A0A1L8I1Y0	A0A1L8I2M6	Uncharacterized protein.	Uncharacterized protein.	0.996
Rad17.L	rad9a	A0A1L8I1Y0	Q7ZZU5	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.999
Rad17.L	rad9b	A0A1L8I1Y0	A0A1L8I188	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.984
rad1	Hus1	A0A1L8I2M6	Q8JHD8	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.999
rad1	Rad17.L	A0A1L8I2M6	A0A1L8I1Y0	Uncharacterized protein.	Uncharacterized protein.	0.996
rad1	rad9a	A0A1L8I2M6	Q7ZZU5	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.999
rad1	rad9b	A0A1L8I2M6	A0A1L8I188	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.999
rad9a	Hus1	Q7ZZU5	Q8JHD8	Cell cycle checkpoint control protein; Belongs to the rad9 family.	Checkpoint protein; Belongs to the HUS1 family.	0.999
rad9a	Rad17.L	Q7ZZU5	A0A1L8I1Y0	Cell cycle checkpoint control protein; Belongs to the rad9 family.	Uncharacterized protein.	0.999
rad9a	rad1	Q7ZZU5	A0A1L8I2M6	Cell cycle checkpoint control protein; Belongs to the rad9 family.	Uncharacterized protein.	0.999
rad9a	rad9b	Q7ZZU5	A0A1L8I188	Cell cycle checkpoint control protein; Belongs to the rad9 family.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.909
rad9b	Hus1	A0A1L8I188	Q8JHD8	Cell cycle checkpoint control protein; Belongs to the rad9 family.	Checkpoint protein; Belongs to the HUS1 family.	0.998
rad9b	Rad17.L	A0A1L8I188	A0A1L8I1Y0	Cell cycle checkpoint control protein; Belongs to the rad9 family.	Uncharacterized protein.	0.984
rad9b	rad1	A0A1L8I188	A0A1L8I2M6	Cell cycle checkpoint control protein; Belongs to the rad9 family.	Uncharacterized protein.	0.999
rad9b	rad9a	A0A1L8I188	Q7ZZU5	Cell cycle checkpoint control protein; Belongs to the rad9 family.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.909