17 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ints1	DUF3677 domain-containing protein. (2191 aa)
	A0A1L8F537	Uncharacterized protein. (965 aa)
	ints3	Uncharacterized protein. (1018 aa)
	A0A1L8FG71	Uncharacterized protein. (204 aa)
	A0A1L8FM59	Uncharacterized protein. (600 aa)
	Ints8.S	Uncharacterized protein. (1006 aa)
	Ints7.S	Uncharacterized protein. (978 aa)
	Ints9.S	Beta-Casp domain-containing protein. (600 aa)
	A0A1L8GCX3	Uncharacterized protein. (939 aa)
	ints5	Uncharacterized protein. (939 aa)
	ints13	Uncharacterized protein. (707 aa)
	ints14	VWFA domain-containing protein. (518 aa)
	A0A1L8GVX9	Uncharacterized protein. (248 aa)
	ints2	Uncharacterized protein. (1175 aa)
	Ints4.L	Uncharacterized protein. (333 aa)
	ints10	Uncharacterized protein. (737 aa)
	A0A310TKV6	Uncharacterized protein. (105 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F537	A0A1L8FG71	A0A1L8F537	A0A1L8FG71	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1L8F537	A0A1L8FM59	A0A1L8F537	A0A1L8FM59	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1L8F537	A0A1L8GCX3	A0A1L8F537	A0A1L8GCX3	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1L8F537	A0A1L8GVX9	A0A1L8F537	A0A1L8GVX9	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1L8F537	A0A310TKV6	A0A1L8F537	A0A310TKV6	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A1L8F537	Ints4.L	A0A1L8F537	A0A1L8HJE3	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A1L8F537	Ints7.S	A0A1L8F537	A0A1L8G173	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A1L8F537	Ints8.S	A0A1L8F537	A0A1L8FTK5	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A1L8F537	Ints9.S	A0A1L8F537	A0A1L8G5L4	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.991
A0A1L8F537	ints1	A0A1L8F537	A0A1L8EXS4	Uncharacterized protein.	DUF3677 domain-containing protein.	0.992
A0A1L8F537	ints10	A0A1L8F537	A0A1L8HWD7	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A1L8F537	ints13	A0A1L8F537	A0A1L8GQ85	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1L8F537	ints14	A0A1L8F537	A0A1L8GSI6	Uncharacterized protein.	VWFA domain-containing protein.	0.987
A0A1L8F537	ints2	A0A1L8F537	A0A1L8H7Z9	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A1L8F537	ints5	A0A1L8F537	A0A1L8GJU2	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1L8FG71	A0A1L8F537	A0A1L8FG71	A0A1L8F537	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1L8FG71	A0A1L8GCX3	A0A1L8FG71	A0A1L8GCX3	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A1L8FG71	A0A1L8GVX9	A0A1L8FG71	A0A1L8GVX9	Uncharacterized protein.	Uncharacterized protein.	0.894
A0A1L8FG71	A0A310TKV6	A0A1L8FG71	A0A310TKV6	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A1L8FG71	Ints4.L	A0A1L8FG71	A0A1L8HJE3	Uncharacterized protein.	Uncharacterized protein.	0.982