(30 nodes) Mixed, incl. Lysosomal oligosaccharide catabolism, and Glycoside hydrolase superfamily network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	naga	Alpha-galactosidase. (410 aa)
	A0A1L8ERB5	P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family. (870 aa)
	naga-2	Alpha-galactosidase. (412 aa)
	ganc	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family. (917 aa)
	fam149b1	DUF3719 domain-containing protein. (572 aa)
	A0A1L8G7I9	Uncharacterized protein. (453 aa)
	A0A1L8GCZ7	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (691 aa)
	A0A1L8GDC7	Uncharacterized protein. (317 aa)
	A0A1L8GJB3	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (690 aa)
	A0A1L8GLL8	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (361 aa)
	man2c1	Alpha-mann_mid domain-containing protein. (1049 aa)
	Man2b1.L	Alpha-mannosidase. (972 aa)
	A0A1L8H6U1	Chitin-binding type-2 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (505 aa)
	Chia.S	Chitin-binding type-2 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (482 aa)
	A0A1L8H746	Chitin-binding type-2 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (485 aa)
	A0A1L8H7R1	Fn3_like domain-containing protein. (746 aa)
	b3galt5.2-2	Hexosyltransferase. (314 aa)
	A0A1L8HCF5	Hexosyltransferase. (315 aa)
	A0A1L8HKZ6	Ig-like domain-containing protein. (221 aa)
	A0A1L8HLB5	DUF3719 domain-containing protein. (863 aa)
	A0A1L8HRD1	Beta-hexosaminidase. (517 aa)
	Nagk.L	BcrAD_BadFG domain-containing protein. (298 aa)
	man2b2	Alpha-mannosidase. (1004 aa)
	gba3	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family. (505 aa)
	A0A1L8HTH4	Ig-like domain-containing protein. (236 aa)
	A0A1L8HTZ0	DUF3719 domain-containing protein. (627 aa)
	Manba.L	Uncharacterized protein. (887 aa)
	hexb	Beta-hexosaminidase. (553 aa)
	renbp	MGC114748 protein. (403 aa)
	chit1	MGC80644 protein; Belongs to the glycosyl hydrolase 18 family. (489 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ERB5	A0A1L8GDC7	A0A1L8ERB5	A0A1L8GDC7	P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.956
A0A1L8ERB5	A0A1L8H7R1	A0A1L8ERB5	A0A1L8H7R1	P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Fn3_like domain-containing protein.	0.930
A0A1L8ERB5	Manba.L	A0A1L8ERB5	A0A1L8HUZ9	P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.423
A0A1L8ERB5	ganc	A0A1L8ERB5	A0A1L8FAY2	P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.914
A0A1L8ERB5	gba3	A0A1L8ERB5	A0A1L8HTG7	P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family.	0.918
A0A1L8ERB5	man2c1	A0A1L8ERB5	A0A1L8H053	P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-mann_mid domain-containing protein.	0.408
A0A1L8G7I9	A0A1L8HLB5	A0A1L8G7I9	A0A1L8HLB5	Uncharacterized protein.	DUF3719 domain-containing protein.	0.514
A0A1L8G7I9	A0A1L8HTZ0	A0A1L8G7I9	A0A1L8HTZ0	Uncharacterized protein.	DUF3719 domain-containing protein.	0.514
A0A1L8G7I9	fam149b1	A0A1L8G7I9	A0A1L8FEZ2	Uncharacterized protein.	DUF3719 domain-containing protein.	0.789
A0A1L8GCZ7	Manba.L	A0A1L8GCZ7	A0A1L8HUZ9	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.423
A0A1L8GCZ7	man2c1	A0A1L8GCZ7	A0A1L8H053	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-mann_mid domain-containing protein.	0.408
A0A1L8GDC7	A0A1L8ERB5	A0A1L8GDC7	A0A1L8ERB5	Uncharacterized protein.	P-type domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.956
A0A1L8GJB3	Manba.L	A0A1L8GJB3	A0A1L8HUZ9	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.423
A0A1L8GJB3	man2c1	A0A1L8GJB3	A0A1L8H053	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	Alpha-mann_mid domain-containing protein.	0.408
A0A1L8GLL8	A0A1L8HLB5	A0A1L8GLL8	A0A1L8HLB5	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	DUF3719 domain-containing protein.	0.476
A0A1L8GLL8	A0A1L8HRD1	A0A1L8GLL8	A0A1L8HRD1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Beta-hexosaminidase.	0.476
A0A1L8GLL8	A0A1L8HTZ0	A0A1L8GLL8	A0A1L8HTZ0	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	DUF3719 domain-containing protein.	0.476
A0A1L8GLL8	fam149b1	A0A1L8GLL8	A0A1L8FEZ2	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	DUF3719 domain-containing protein.	0.476
A0A1L8GLL8	hexb	A0A1L8GLL8	A0A1L8I1Z7	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Beta-hexosaminidase.	0.476
A0A1L8GLL8	man2c1	A0A1L8GLL8	A0A1L8H053	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Alpha-mann_mid domain-containing protein.	0.501