15 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	zc3h15	Uncharacterized protein. (426 aa)
	zc3h15-2	Uncharacterized protein. (426 aa)
	Prkag1.S	Uncharacterized protein. (521 aa)
	rwdd1	RWD domain-containing protein. (242 aa)
	Rwdd2a.L	RWD domain-containing protein. (290 aa)
	dusp28	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (147 aa)
	lmbr1l	Uncharacterized protein; Belongs to the LIMR family. (483 aa)
	ikzf4	Uncharacterized protein. (556 aa)
	Lmbr1l.L	Uncharacterized protein; Belongs to the LIMR family. (483 aa)
	dnajc22-2	J domain-containing protein. (340 aa)
	rwdd4	RWD domain-containing protein. (187 aa)
	Rwdd4.L	RWD domain-containing protein. (186 aa)
	drg1	OBG-type G domain-containing protein. (367 aa)
	rwdd1-2	MGC84211 protein. (240 aa)
	drg2	Developmentally regulated GTP-binding protein drg2. (364 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lmbr1l.L	Prkag1.S	A0A1L8HHS9	A0A1L8FQN6	Uncharacterized protein; Belongs to the LIMR family.	Uncharacterized protein.	0.872
Lmbr1l.L	dnajc22-2	A0A1L8HHS9	A0A1L8HHT7	Uncharacterized protein; Belongs to the LIMR family.	J domain-containing protein.	0.763
Lmbr1l.L	dusp28	A0A1L8HHS9	A0A1L8GAW0	Uncharacterized protein; Belongs to the LIMR family.	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.882
Lmbr1l.L	ikzf4	A0A1L8HHS9	A0A1L8H9T3	Uncharacterized protein; Belongs to the LIMR family.	Uncharacterized protein.	0.877
Lmbr1l.L	zc3h15	A0A1L8HHS9	A0A1L8EPZ9	Uncharacterized protein; Belongs to the LIMR family.	Uncharacterized protein.	0.830
Lmbr1l.L	zc3h15-2	A0A1L8HHS9	A0A1L8EXB8	Uncharacterized protein; Belongs to the LIMR family.	Uncharacterized protein.	0.772
Prkag1.S	Lmbr1l.L	A0A1L8FQN6	A0A1L8HHS9	Uncharacterized protein.	Uncharacterized protein; Belongs to the LIMR family.	0.872
Prkag1.S	lmbr1l	A0A1L8FQN6	A0A1L8H9I8	Uncharacterized protein.	Uncharacterized protein; Belongs to the LIMR family.	0.872
Rwdd2a.L	rwdd1-2	A0A1L8G9I7	Q68EW4	RWD domain-containing protein.	MGC84211 protein.	0.956
Rwdd4.L	drg1	A0A1L8HU19	A0A1L8I092	RWD domain-containing protein.	OBG-type G domain-containing protein.	0.878
Rwdd4.L	drg2	A0A1L8HU19	Q76FS4	RWD domain-containing protein.	Developmentally regulated GTP-binding protein drg2.	0.950
Rwdd4.L	zc3h15	A0A1L8HU19	A0A1L8EPZ9	RWD domain-containing protein.	Uncharacterized protein.	0.537
Rwdd4.L	zc3h15-2	A0A1L8HU19	A0A1L8EXB8	RWD domain-containing protein.	Uncharacterized protein.	0.537
dnajc22-2	Lmbr1l.L	A0A1L8HHT7	A0A1L8HHS9	J domain-containing protein.	Uncharacterized protein; Belongs to the LIMR family.	0.763
dnajc22-2	dusp28	A0A1L8HHT7	A0A1L8GAW0	J domain-containing protein.	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.834
dnajc22-2	ikzf4	A0A1L8HHT7	A0A1L8H9T3	J domain-containing protein.	Uncharacterized protein.	0.829
dnajc22-2	lmbr1l	A0A1L8HHT7	A0A1L8H9I8	J domain-containing protein.	Uncharacterized protein; Belongs to the LIMR family.	0.763
dnajc22-2	zc3h15	A0A1L8HHT7	A0A1L8EPZ9	J domain-containing protein.	Uncharacterized protein.	0.809
dnajc22-2	zc3h15-2	A0A1L8HHT7	A0A1L8EXB8	J domain-containing protein.	Uncharacterized protein.	0.757
drg1	Rwdd4.L	A0A1L8I092	A0A1L8HU19	OBG-type G domain-containing protein.	RWD domain-containing protein.	0.878