5 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	crb2	Uncharacterized protein. (1472 aa)
	mpp5	Guanylate kinase-like domain-containing protein. (92 aa)
	Mpp5.L	Uncharacterized protein; Belongs to the MAGUK family. (675 aa)
	patj	Uncharacterized protein. (1796 aa)
	Mpdz.L	Uncharacterized protein. (2149 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mpdz.L	Mpp5.L	A0A1L8HY06	A0A1L8FBA1	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.992
Mpdz.L	crb2	A0A1L8HY06	A0A1L8F1Z8	Uncharacterized protein.	Uncharacterized protein.	0.425
Mpdz.L	mpp5	A0A1L8HY06	A0A1L8F4C3	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.992
Mpp5.L	Mpdz.L	A0A1L8FBA1	A0A1L8HY06	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.992
Mpp5.L	crb2	A0A1L8FBA1	A0A1L8F1Z8	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.886
Mpp5.L	mpp5	A0A1L8FBA1	A0A1L8F4C3	Uncharacterized protein; Belongs to the MAGUK family.	Guanylate kinase-like domain-containing protein.	0.900
Mpp5.L	patj	A0A1L8FBA1	A0A1L8GLZ0	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.988
crb2	Mpdz.L	A0A1L8F1Z8	A0A1L8HY06	Uncharacterized protein.	Uncharacterized protein.	0.425
crb2	Mpp5.L	A0A1L8F1Z8	A0A1L8FBA1	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.886
crb2	mpp5	A0A1L8F1Z8	A0A1L8F4C3	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.886
crb2	patj	A0A1L8F1Z8	A0A1L8GLZ0	Uncharacterized protein.	Uncharacterized protein.	0.686
mpp5	Mpdz.L	A0A1L8F4C3	A0A1L8HY06	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.992
mpp5	Mpp5.L	A0A1L8F4C3	A0A1L8FBA1	Guanylate kinase-like domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.900
mpp5	crb2	A0A1L8F4C3	A0A1L8F1Z8	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.886
mpp5	patj	A0A1L8F4C3	A0A1L8GLZ0	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.988
patj	Mpp5.L	A0A1L8GLZ0	A0A1L8FBA1	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.988
patj	crb2	A0A1L8GLZ0	A0A1L8F1Z8	Uncharacterized protein.	Uncharacterized protein.	0.686
patj	mpp5	A0A1L8GLZ0	A0A1L8F4C3	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.988